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Hoffmann, R. A wiki for the life sciences where authorship matters. Nature Genetics (2008)
 
Chemical Compound Review

AC1NSSP0     [(2S,3R,4S,5S)-5-(2,4- dioxopyrimidin-1-yl)...

Synonyms:
 
 
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Disease relevance of Uridylic acid

 

High impact information on Uridylic acid

  • Spliceosomal U6 small nuclear RNA (U6 RNA) in species as diverse as man, frog, fruitfly, and soybean have at their 3' ends a cyclic 2',3'-phosphate (greater than p) apparently derived from uridylic acid residues that were added post-transcriptionally [5].
  • These data show that the same U3 snoRNA contains different cap structures in different species and suggest that the kind of cap structure that an uridylic acid-rich small nuclear RNA contains is dependent on the RNA polymerase responsible for its synthesis [6].
  • Since Yb forms of the transferases have been colocalized with uridylic acid-rich small nuclear RNAs at interchromatinic regions of the cell nucleus, autoregulation of prostate growth by androgens may be carried out through the modulation of RNA production or processing in this target organ [7].
  • The isolation and characterization of HeLa cell messenger RNA-like molecules containing uridylic acid-rich oligonucleotide sequences [8].
  • Various lines of evidence indicate a relatively high preference of the enzyme for the hydrolysis primarily of 3'-phosphoester linkages of adenylic acid units and secondarily of thymidylic or uridylic acid units in DNA and in ribohomopolymers, respectively [9].
 

Biological context of Uridylic acid

  • These results also suggested that the 2'-O-methylated uridylic acid residue plays a role in the 5.8S-28S rRNA interaction and thermal denaturation studies confirmed this by showing that methylation destabilizes the 5.8S-28S rRNA junction [10].
  • Interestingly, there was significant down-regulation of spliceosomal uridylic acid rich small nuclear RNAs (UsnRNAs) U1B and U4-U6 due to EGCG treatment [11].
  • These results support hypotheses that the phenotypes common to r, Dhod-null, and r-1 flies are consequences of uridylic acid deficiency, whereas the r-1-specific phenotypes result from orotic acid accumulation in flies lacking either or both of the last two enzymes of de novo pyrimidine biosynthesis [12].
 

Anatomical context of Uridylic acid

  • In a poly Uridylic-acid-directed incorporation system the ribosomes from aged and mature animals showed a decrease in activity [13].
 

Associations of Uridylic acid with other chemical compounds

 

Gene context of Uridylic acid

  • The data are consistent with a model for RF1 selection in which RF1 makes a specific contact(s) to the 3' neighbor and that this interaction is most favorable to uridylic acid [18].
  • Isofocusing in granulated gels separated intact uridylic acid (U)-snRNPs from tRNA and La RNPs [19].
  • In the presence of uridylic acid, Lys-41 was the only residue protected from modification by the reagent with a concomitant reduction of the epsilon-NH2 resonance, and the RNase thus modified was fully active [20].

References

  1. O4-(5'-uridylyl)tyrosine is the bond between the genome-linked protein and the RNA of poliovirus. Rothberg, P.G., Harris, T.J., Nomoto, A., Wimmer, E. Proc. Natl. Acad. Sci. U.S.A. (1978) [Pubmed]
  2. Polynucleotide analogs: acrylic acid and maleic acid copolymers of 1-vinyluracil and 9-vinyladenine. Olson, P.E., Fraher, P., Boguslawski, S., Mertes, M.P. Biochemistry (1975) [Pubmed]
  3. Regulation of uridylic acid biosynthesis in the cyanobacterium Anabaena variabilis. Currier, T.C., Wolk, C.P. J. Bacteriol. (1978) [Pubmed]
  4. A recombinant 70K protein ELISA. Screening for antibodies against U1snRNP proteins in human sera. Seelig, H.P., Ehrfeld, H., Schroeter, H., Heim, C., Renz, M. J. Immunol. Methods (1991) [Pubmed]
  5. Cyclic 2',3'-phosphates and nontemplated nucleotides at the 3' end of spliceosomal U6 small nuclear RNA's. Lund, E., Dahlberg, J.E. Science (1992) [Pubmed]
  6. Cap structure of U3 small nucleolar RNA in animal and plant cells is different. gamma-Monomethyl phosphate cap structure in plant RNA. Shimba, S., Buckley, B., Reddy, R., Kiss, T., Filipowicz, W. J. Biol. Chem. (1992) [Pubmed]
  7. Identification of glutathione S-transferase Yb1 mRNA as the androgen-repressed mRNA by cDNA cloning and sequence analysis. Chang, C.S., Saltzman, A.G., Sorensen, N.S., Hiipakka, R.A., Liao, S.S. J. Biol. Chem. (1987) [Pubmed]
  8. The isolation and characterization of HeLa cell messenger RNA-like molecules containing uridylic acid-rich oligonucleotide sequences. Molloy, G.R. J. Biol. Chem. (1980) [Pubmed]
  9. Activity of wheat seedling nuclease toward single-stranded nucleic acids. Kroeker, W.D., Hanson, D.M., Fairley, J.L. J. Biol. Chem. (1975) [Pubmed]
  10. Effect of 2'-O-methylation on the structure of mammalian 5.8S rRNAs and the 5.8S-28S rRNA junction. Nazar, R.N., Lo, A.C., Wildeman, A.G., Sitz, T.O. Nucleic Acids Res. (1983) [Pubmed]
  11. Epigallocatechin gallate induced apoptosis in Sarcoma180 cells in vivo: Mediated by p53 pathway and inhibition in U1B, U4-U6 UsnRNAs expression. Manna, S., Banerjee, S., Mukherjee, S., Das, S., Panda, C.K. Apoptosis (2006) [Pubmed]
  12. Analysis of the phenotypes exhibited by rudimentary-like mutants of Drosophila melanogaster. Conner, T.W., Rawls, J.M. Biochem. Genet. (1982) [Pubmed]
  13. Protein synthesis studies in skeletal muscle of aging rats. I. Alterations in nitrogen composition and protein synthesis using a crude polyribosome and pH 5 enzyme system. Pluskal, M.G., Moreyra, M., Burini, R.C., Young, V.R. Journal of gerontology. (1984) [Pubmed]
  14. Methylation and ethylation of uridylic acid and thymidylic acid. Reactivity of the ring and phosphate as a function of pH and alkyl group. Singer, B. Biochemistry (1975) [Pubmed]
  15. Purification of acid ribonucleases from bovine spleen. Ohgi, K., Sanda, A., Takizawa, Y., Irie, M. J. Biochem. (1988) [Pubmed]
  16. Oral administration of uridylic acid increases plasma leptin, but suppresses glucose and non-esterified fatty acid concentrations in rats. Yoshioka, K., Katoh, K., Hayashi, H., Mashiko, T., Obara, Y. Life Sci. (2006) [Pubmed]
  17. Base specificity and primary structure of poly U-preferential ribonuclease from chicken liver. Uchida, T., Hayano, K., Iwama, M., Watanabe, H., Sanda, A., Ohgi, K., Irie, M. Biosci. Biotechnol. Biochem. (1996) [Pubmed]
  18. Effects of the nucleotide 3' to an amber codon on ribosomal selection rates of suppressor tRNA and release factor-1. Pedersen, W.T., Curran, J.F. J. Mol. Biol. (1991) [Pubmed]
  19. Isofocusing of antigenic small nuclear ribonucleoproteins. II. Preparative isolation. Schrier, W.H., Feinbaum, R., Okarma, T.B. Anal. Biochem. (1985) [Pubmed]
  20. The use of p-fluorobenzenesulfonyl chloride as a reagent for studies of proteins by fluorine nuclear magnetic resonance. Liao, T.H., Berlin, K.D. Anal. Biochem. (1985) [Pubmed]
 
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