Eugene V. Koonin
National Center for Biotechnology Information
National Library of Medicine
National Institutes of Health
Bethesda
USA
Name/email consistency: high
- Proteorhodopsin genes in giant viruses. Yutin, N., Koonin, E.V. Biol. Direct (2012)
- Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes. Makarova, K.S., Anantharaman, V., Aravind, L., Koonin, E.V. Biol. Direct (2012)
- Archaeal origin of tubulin. Yutin, N., Koonin, E.V. Biol. Direct (2012)
- Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems. Makarova, K.S., Aravind, L., Wolf, Y.I., Koonin, E.V. Biol. Direct (2011)
- Taming of the shrewd: novel eukaryotic genes from RNA viruses. Koonin, E.V. BMC Biol. (2010)
- Viruses know more than one way to don a cap. Koonin, E.V., Moss, B. Proc. Natl. Acad. Sci. U.S.A. (2010)
- Preview. The incredible expanding ancestor of eukaryotes. Koonin, E.V. Cell (2010)
- On the origin of cells and viruses: primordial virus world scenario. Koonin, E.V. Ann. N. Y. Acad. Sci. (2009)
- Is evolution Darwinian or/and Lamarckian? Koonin, E.V., Wolf, Y.I. Biol. Direct (2009)
- The fundamental units, processes and patterns of evolution, and the tree of life conundrum. Koonin, E.V., Wolf, Y.I. Biol. Direct (2009)
- Evolution of genome architecture. Koonin, E.V. Int. J. Biochem. Cell Biol. (2009)
- Origin and evolution of the genetic code: the universal enigma. Koonin, E.V., Novozhilov, A.S. IUBMB. Life (2009)
- Darwinian evolution in the light of genomics. Koonin, E.V. Nucleic Acids Res. (2009)
- Towards a postmodern synthesis of evolutionary biology. Koonin, E.V. Cell. Cycle (2009)
- Intron-dominated genomes of early ancestors of eukaryotes. Koonin, E.V. J. Hered. (2009)
- The Origin at 150: is a new evolutionary synthesis in sight?. Koonin, E.V. Trends Genet. (2009)
- Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world. Koonin, E.V., Wolf, Y.I. Nucleic Acids Res. (2008)
- An RNA-making reactor for the origin of life. Koonin, E.V. Proc. Natl. Acad. Sci. U.S.A. (2007)
- The cosmological model of eternal inflation and the transition from chance to biological evolution in the history of life. Koonin, E.V. Biol. Direct (2007)
- The Biological Big Bang model for the major transitions in evolution. Koonin, E.V. Biol. Direct (2007)
- Orthologs of the small RPB8 subunit of the eukaryotic RNA polymerases are conserved in hyperthermophilic Crenarchaeota and "Korarchaeota". Koonin, E.V., Makarova, K.S., Elkins, J.G. Biol. Direct (2007)
- Evolution of complexity in the viral world: the dawn of a new vision. Koonin, E.V., Dolja, V.V. Virus Res. (2006)
- The origin of introns and their role in eukaryogenesis: a compromise solution to the introns-early versus introns-late debate?. Koonin, E.V. Biol. Direct (2006)
- Evolutionary systems biology: links between gene evolution and function. Koonin, E.V., Wolf, Y.I. Curr. Opin. Biotechnol. (2006)
- The ancient Virus World and evolution of cells. Koonin, E.V., Senkevich, T.G., Dolja, V.V. Biol. Direct (2006)
- Temporal order of evolution of DNA replication systems inferred by comparison of cellular and viral DNA polymerases. Koonin, E.V. Biol. Direct (2006)
- Virology: Gulliver among the Lilliputians. Koonin, E.V. Curr. Biol. (2005)
- p53 gain-of-function: tumor biology and bioinformatics come together. Koonin, E.V., Rogozin, I.B., Glazko, G.V. Cell. Cycle (2005)
- Paralogs and mutational robustness linked through transcriptional reprogramming. Koonin, E.V. Bioessays (2005)
- On the origin of genomes and cells within inorganic compartments. Koonin, E.V., Martin, W. Trends Genet. (2005)
- Orthologs, paralogs, and evolutionary genomics. Koonin, E.V. Annu. Rev. Genet. (2005)
- A non-adaptationist perspective on evolution of genomic complexity or the continued dethroning of man. Koonin, E.V. Cell. Cycle (2004)
- A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes. Koonin, E.V., Fedorova, N.D., Jackson, J.D., Jacobs, A.R., Krylov, D.M., Makarova, K.S., Mazumder, R., Mekhedov, S.L., Nikolskaya, A.N., Rao, B.S., Rogozin, I.B., Smirnov, S., Sorokin, A.V., Sverdlov, A.V., Vasudevan, S., Wolf, Y.I., Yin, J.J., Natale, D.A. Genome Biol. (2004)
- Comparative genomics of Archaea: how much have we learned in six years, and what's next?. Makarova, K.S., Koonin, E.V. Genome Biol. (2003)
- Getting positive about selection. Koonin, E.V., Rogozin, I.B. Genome Biol. (2003)
- Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ. Omelchenko, M.V., Makarova, K.S., Wolf, Y.I., Rogozin, I.B., Koonin, E.V. Genome Biol. (2003)
- Horizontal gene transfer: the path to maturity. Koonin, E.V. Mol. Microbiol. (2003)
- Comparative genomics, minimal gene-sets and the last universal common ancestor. Koonin, E.V. Nat. Rev. Microbiol. (2003)
- Origin and evolution of eukaryotic apoptosis: the bacterial connection. Koonin, E.V., Aravind, L. Cell Death Differ. (2002)
- Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach. Koonin, E.V., Wolf, Y.I., Aravind, L. Genome Res. (2001)
- Computational genomics. Koonin, E.V. Curr. Biol. (2001)
- An apology for orthologs - or brave new memes. Koonin, E.V. Genome Biol. (2001)
- Horizontal gene transfer in prokaryotes: quantification and classification. Koonin, E.V., Makarova, K.S., Aravind, L. Annu. Rev. Microbiol. (2001)
- Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins. Makarova, K.S., Ponomarev, V.A., Koonin, E.V. Genome Biol. (2001)
- Bridging the gap between sequence and function. Koonin, E.V. Trends Genet. (2000)
- The impact of comparative genomics on our understanding of evolution. Koonin, E.V., Aravind, L., Kondrashov, A.S. Cell (2000)
- Bacterial homologs of the small subunit of eukaryotic DNA primase. Koonin, E.V., Wolf, Y.I., Kondrashov, A.S., Aravind, L. J. Mol. Microbiol. Biotechnol. (2000)
- How many genes can make a cell: the minimal-gene-set concept. Koonin, E.V. Annu. Rev. Genomics. Hum. Genet (2000)
- Genomics: re-evaluation of translation machinery evolution. Koonin, E.V., Aravind, L. Curr. Biol. (1998)
- Beyond complete genomes: from sequence to structure and function. Koonin, E.V., Tatusov, R.L., Galperin, M.Y. Curr. Opin. Struct. Biol. (1998)
- Big time for small genomes. Koonin, E.V. Genome Res. (1997)
- Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea. Koonin, E.V., Mushegian, A.R., Galperin, M.Y., Walker, D.R. Mol. Microbiol. (1997)
- Prokaryotic genomes: the emerging paradigm of genome-based microbiology. Koonin, E.V., Galperin, M.Y. Curr. Opin. Genet. Dev. (1997)
- Two domains of superfamily I helicases may exist as separate proteins. Koonin, E.V., Rudd, K.E. Protein Sci. (1996)
- Complete genome sequences of cellular life forms: glimpses of theoretical evolutionary genomics. Koonin, E.V., Mushegian, A.R. Curr. Opin. Genet. Dev. (1996)
