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Hoffmann, R. A wiki for the life sciences where authorship matters. Nature Genetics (2008)
 

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James R. Johnson

Veterans Affairs Medical Center and University of Minnesota

Minneapolis

USA

[email]@umn.edu

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Affiliations

  • Veterans Affairs Medical Center and University of Minnesota, Minneapolis, USA. 2002 - 2013
  • Address correspondence to James R. Johnson. 2012
  • Mucosal and Vaccine Research Center, Minneapolis Veterans Affairs Medical Center, Minnesota, Minneapolis 55417, USA. 2002 - 2009

References

  1. Abrupt emergence of a single dominant multidrug-resistant strain of Escherichia coli. Johnson, J.R., Tchesnokova, V., Johnston, B., Clabots, C., Roberts, P.L., Billig, M., Riddell, K., Rogers, P., Qin, X., Butler-Wu, S., Price, L.B., Aziz, M., Nicolas-Chanoine, M.H., Debroy, C., Robicsek, A., Hansen, G., Urban, C., Platell, J., Trott, D.J., Zhanel, G., Weissman, S.J., Cookson, B.T., Fang, F.C., Limaye, A.P., Scholes, D., Chattopadhyay, S., Hooper, D.C., Sokurenko, E.V. J. Infect. Dis. (2013) [Pubmed]
  2. Molecular epidemiological analysis of Escherichia coli sequence type ST131 (O25:H4) and blaCTX-M-15 among extended-spectrum-β-lactamase-producing E. coli from the United States, 2000 to 2009. Johnson, J.R., Urban, C., Weissman, S.J., Jorgensen, J.H., Lewis, J.S., Hansen, G., Edelstein, P.H., Robicsek, A., Cleary, T., Adachi, J., Paterson, D., Quinn, J., Hanson, N.D., Johnston, B.D., Clabots, C., Kuskowski, M.A. Antimicrob. Agents Chemother. (2012) [Pubmed]
  3. In vitro comparison of nitrofurazone- and silver alloy-coated foley catheters for contact-dependent and diffusible inhibition of urinary tract infection-associated microorganisms. Johnson, J.R., Johnston, B., Kuskowski, M.A. Antimicrob. Agents Chemother. (2012) [Pubmed]
  4. Comparison of Escherichia coli ST131 pulsotypes, by epidemiologic traits, 1967-2009. Johnson, J.R., Nicolas-Chanoine, M.H., DebRoy, C., Castanheira, M., Robicsek, A., Hansen, G., Weissman, S., Urban, C., Platell, J., Trott, D., Zhanel, G., Clabots, C., Johnston, B.D., Kuskowski, M.A. Emerging Infect. Dis. (2012) [Pubmed]
  5. Virulence of Escherichia coli Clinical Isolates in a Murine Sepsis Model in Relation to Sequence Type ST131 Status, Fluoroquinolone Resistance, and Virulence Genotype. Johnson, J.R., Porter, S.B., Zhanel, G., Kuskowski, M.A., Denamur, E. Infect. Immun. (2012) [Pubmed]
  6. In vitro activity of available antimicrobial coated Foley catheters against Escherichia coli, including strains resistant to extended spectrum cephalosporins. Johnson, J.R., Johnston, B.D., Kuskowski, M.A., Pitout, J. J. Urol. (2010) [Pubmed]
  7. Within-household sharing of a fluoroquinolone-resistant Escherichia coli sequence type ST131 strain causing pediatric osteoarticular infection. Johnson, J.R., Anderson, J.T., Clabots, C., Johnston, B., Cooperstock, M. Pediatr. Infect. Dis. J. (2010) [Pubmed]
  8. Escherichia coli sequence type ST131 as the major cause of serious multidrug-resistant E. coli infections in the United States. Johnson, J.R., Johnston, B., Clabots, C., Kuskowski, M.A., Castanheira, M. Clin. Infect. Dis. (2010) [Pubmed]
  9. Escherichia coli sequence type ST131 as an emerging fluoroquinolone-resistant uropathogen among renal transplant recipients. Johnson, J.R., Johnston, B., Clabots, C., Kuskowski, M.A., Pendyala, S., Debroy, C., Nowicki, B., Rice, J. Antimicrob. Agents Chemother. (2010) [Pubmed]
  10. Virulence genotypes and phylogenetic background of fluoroquinolone-resistant and susceptible Escherichia coli urine isolates from dogs with urinary tract infection. Johnson, J.R., Kuskowski, M.A., Owens, K., Clabots, C., Singer, R.S. Vet. Microbiol. (2009) [Pubmed]
  11. Sharing of Escherichia coli sequence type ST131 and other multidrug-resistant and Urovirulent E. coli strains among dogs and cats within a household. Johnson, J.R., Miller, S., Johnston, B., Clabots, C., Debroy, C. J. Clin. Microbiol. (2009) [Pubmed]
  12. Epidemic clonal groups of Escherichia coli as a cause of antimicrobial-resistant urinary tract infections in Canada, 2002 to 2004. Johnson, J.R., Menard, M., Johnston, B., Kuskowski, M.A., Nichol, K., Zhanel, G.G. Antimicrob. Agents Chemother. (2009) [Pubmed]
  13. Escherichia coli colonization patterns among human household members and pets, with attention to acute urinary tract infection. Johnson, J.R., Owens, K., Gajewski, A., Clabots, C. J. Infect. Dis. (2008) [Pubmed]
  14. Molecular epidemiology and phylogenetic distribution of the Escherichia coli pks genomic island. Johnson, J.R., Johnston, B., Kuskowski, M.A., Nougayrede, J.P., Oswald, E. J. Clin. Microbiol. (2008) [Pubmed]
  15. Virulence genotypes and phylogenetic background of Escherichia coli serogroup O6 isolates from humans, dogs, and cats. Johnson, J.R., Johnston, B., Clabots, C.R., Kuskowski, M.A., Roberts, E., DebRoy, C. J. Clin. Microbiol. (2008) [Pubmed]
  16. Multiple-host sharing, long-term persistence, and virulence of Escherichia coli clones from human and animal household members. Johnson, J.R., Clabots, C., Kuskowski, M.A. J. Clin. Microbiol. (2008) [Pubmed]
  17. Bacterial characteristics as predictors of posttherapy recurrent bacteriuria among children with acute uncomplicated cystitis caused by Escherichia coli. Johnson, J.R., Johnston, B., Murray, A., Kuskowski, M.A., Maslow, J.N., Johnson, C. Pediatr. Infect. Dis. J. (2007) [Pubmed]
  18. Antimicrobial drug-resistant Escherichia coli from humans and poultry products, Minnesota and Wisconsin, 2002-2004. Johnson, J.R., Sannes, M.R., Croy, C., Johnston, B., Clabots, C., Kuskowski, M.A., Bender, J., Smith, K.E., Winokur, P.L., Belongia, E.A. Emerging Infect. Dis. (2007) [Pubmed]
  19. Sharing of virulent Escherichia coli clones among household members of a woman with acute cystitis. Johnson, J.R., Clabots, C. Clin. Infect. Dis. (2006) [Pubmed]
  20. Effect of inactivation of the global oxidative stress regulator oxyR on the colonization ability of Escherichia coli O1:K1:H7 in a mouse model of ascending urinary tract infection. Johnson, J.R., Clabots, C., Rosen, H. Infect. Immun. (2006) [Pubmed]
  21. Systematic review: antimicrobial urinary catheters to prevent catheter-associated urinary tract infection in hospitalized patients. Johnson, J.R., Kuskowski, M.A., Wilt, T.J. Ann. Intern. Med. (2006) [Pubmed]
  22. Similarity between human and chicken Escherichia coli isolates in relation to ciprofloxacin resistance status. Johnson, J.R., Kuskowski, M.A., Menard, M., Gajewski, A., Xercavins, M., Garau, J. J. Infect. Dis. (2006) [Pubmed]
  23. Phylogenetic relationships among clonal groups of extraintestinal pathogenic Escherichia coli as assessed by multi-locus sequence analysis. Johnson, J.R., Owens, K.L., Clabots, C.R., Weissman, S.J., Cannon, S.B. Microbes Infect. (2006) [Pubmed]
  24. Experimental mouse lethality of Escherichia coli isolates, in relation to accessory traits, phylogenetic group, and ecological source. Johnson, J.R., Clermont, O., Menard, M., Kuskowski, M.A., Picard, B., Denamur, E. J. Infect. Dis. (2006) [Pubmed]
  25. Extended virulence genotypes and phylogenetic background of Escherichia coli isolates from patients with cystitis, pyelonephritis, or prostatitis. Johnson, J.R., Kuskowski, M.A., Gajewski, A., Soto, S., Horcajada, J.P., Jimenez de Anta, M.T., Vila, J. J. Infect. Dis. (2005) [Pubmed]
  26. Virulence genotype and phylogenetic origin in relation to antibiotic resistance profile among Escherichia coli urine sample isolates from Israeli women with acute uncomplicated cystitis. Johnson, J.R., Kuskowski, M.A., O'bryan, T.T., Colodner, R., Raz, R. Antimicrob. Agents Chemother. (2005) [Pubmed]
  27. Distribution and characteristics of Escherichia coli clonal group A. Johnson, J.R., Murray, A.C., Kuskowski, M.A., Schubert, S., Prère, M.F., Picard, B., Colodner, R., Raz, R. Emerging Infect. Dis. (2005) [Pubmed]
  28. Host-pathogen relationships among Escherichia coli isolates recovered from men with febrile urinary tract infection. Johnson, J.R., Scheutz, F., Ulleryd, P., Kuskowski, M.A., O'Bryan, T.T., Sandberg, T. Clin. Infect. Dis. (2005) [Pubmed]
  29. Antimicrobial-resistant and extraintestinal pathogenic Escherichia coli in retail foods. Johnson, J.R., Kuskowski, M.A., Smith, K., O'Bryan, T.T., Tatini, S. J. Infect. Dis. (2005) [Pubmed]
  30. Contamination of retail foods, particularly turkey, from community markets (Minnesota, 1999-2000) with antimicrobial-resistant and extraintestinal pathogenic Escherichia coli. Johnson, J.R., Delavari, P., O'Bryan, T.T., Smith, K.E., Tatini, S. Foodborne Pathog. Dis. (2005) [Pubmed]
  31. Phylogenetic and pathotypic comparison of concurrent urine and rectal Escherichia coli isolates from men with febrile urinary tract infection. Johnson, J.R., Scheutz, F., Ulleryd, P., Kuskowski, M.A., O'Bryan, T.T., Sandberg, T. J. Clin. Microbiol. (2005) [Pubmed]
  32. Molecular epidemiology of extraintestinal pathogenic (uropathogenic) Escherichia coli. Johnson, J.R., Russo, T.A. Int. J. Med. Microbiol. (2005) [Pubmed]
  33. Spontaneous conversion to quinolone and fluoroquinolone resistance among wild-type Escherichia coli isolates in relation to phylogenetic background and virulence genotype. Johnson, J.R., Johnston, B., Kuskowski, M.A., Colodner, R., Raz, R. Antimicrob. Agents Chemother. (2005) [Pubmed]
  34. Bacterial characteristics in relation to clinical source of Escherichia coli isolates from women with acute cystitis or pyelonephritis and uninfected women. Johnson, J.R., Owens, K., Gajewski, A., Kuskowski, M.A. J. Clin. Microbiol. (2005) [Pubmed]
  35. Enterococcal aggregation substance and binding substance are not major contributors to urinary tract colonization by Enterococcus faecalis in a mouse model of ascending unobstructed urinary tract infection. Johnson, J.R., Clabots, C., Hirt, H., Waters, C., Dunny, G. Infect. Immun. (2004) [Pubmed]
  36. Detection of the Escherichia coli group 2 polysaccharide capsule synthesis Gene kpsM by a rapid and specific PCR-based assay. Johnson, J.R., O'Bryan, T.T. J. Clin. Microbiol. (2004) [Pubmed]
  37. Rapid and specific detection of Escherichia coli clonal group A by gene-specific PCR. Johnson, J.R., Owens, K., Manges, A.R., Riley, L.W. J. Clin. Microbiol. (2004) [Pubmed]
  38. Rapid and specific detection of the O15:K52:H1 clonal group of Escherichia coli by gene-specific PCR. Johnson, J.R., Owens, K., Sabate, M., Prats, G. J. Clin. Microbiol. (2004) [Pubmed]
  39. Virulence characteristics and phylogenetic background of multidrug-resistant and antimicrobial-susceptible clinical isolates of Escherichia coli from across the United States, 2000-2001. Johnson, J.R., Kuskowski, M.A., Gajewski, A., Sahm, D.F., Karlowsky, J.A. J. Infect. Dis. (2004) [Pubmed]
  40. Identification of urovirulence traits in Escherichia coli by comparison of urinary and rectal E. coli isolates from dogs with urinary tract infection. Johnson, J.R., Kaster, N., Kuskowski, M.A., Ling, G.V. J. Clin. Microbiol. (2003) [Pubmed]
  41. Microbial virulence determinants and the pathogenesis of urinary tract infection. Johnson, J.R. Infect. Dis. Clin. North Am. (2003) [Pubmed]
  42. High-frequency secondary mutations after suicide-driven allelic exchange mutagenesis in extraintestinal pathogenic Escherichia coli. Johnson, J.R., Lockman, H.A., Owens, K., Jelacic, S., Tarr, P.I. J. Bacteriol. (2003) [Pubmed]
  43. Phylogenetic origin and virulence genotype in relation to resistance to fluoroquinolones and/or extended-spectrum cephalosporins and cephamycins among Escherichia coli isolates from animals and humans. Johnson, J.R., Kuskowski, M.A., Owens, K., Gajewski, A., Winokur, P.L. J. Infect. Dis. (2003) [Pubmed]
  44. Extraintestinal pathogenic Escherichia coli as a cause of invasive nonurinary infections. Johnson, J.R., Gajewski, A., Lesse, A.J., Russo, T.A. J. Clin. Microbiol. (2003) [Pubmed]
  45. Extraintestinal pathogenic Escherichia coli: "the other bad E coli". Johnson, J.R., Russo, T.A. J. Lab. Clin. Med. (2002) [Pubmed]
  46. Uropathogenic Escherichia coli as agents of diverse non-urinary tract extraintestinal infections. Johnson, J.R., Russo, T.A. J. Infect. Dis. (2002) [Pubmed]
  47. Phylogenetic background and virulence profiles of fluoroquinolone-resistant clinical Escherichia coli isolates from the Netherlands. Johnson, J.R., van der Schee, C., Kuskowski, M.A., Goessens, W., van Belkum, A. J. Infect. Dis. (2002) [Pubmed]
 
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