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Hoffmann, R. A wiki for the life sciences where authorship matters. Nature Genetics (2008)
 
Chemical Compound Review

lysine     [(5S)-5-amino-5-carboxy- pentyl]azanium

Synonyms: AC1LD37U, lys, 6-ammonionorleucine, lysine, conjugate monoacid, DL-2,5-Diaminovaleric acid, cation, ...
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Disease relevance of lysine

 

High impact information on lysine

  • The mutant gene failed to rescue the growth defect caused by NPS1 disruption, suggesting that Lys792 is essential for the function of NPS1 [2].
  • The epsilon-amino group of lysine (Lys172) of the human B2 receptor provides the only primary amino group within this receptor fragment [3].
  • The results indicate that the Lys-sensitive Asp kinase 2, rather than the Thr-sensitive AK-HSDH2, is the best candidate gene for the quantitative trait locus affecting free amino acid content in Oh545o2 [4].
  • The results provide a rational basis for the inability of the mutated deoxyhypusine synthase gene encoding arginine in place of Lys350 to support growth in yeast (Park et al., 1998) [5].
  • In recent years a growing number of venoms from snakes of Agkistrodon, Bothrops and Trimeresurus species have been shown to contain a catalytically inactive PLA2-homologue in which the highly conserved aspartic acid at position 49 (Asp49) is substituted by lysine (Lys49) [6].
 

Biological context of lysine

  • We here present results of a systematic X-ray crystallographic and amino acid sequence analysis study of Lys49 PLA2s and propose a model to explain the Ca2+-independent membrane damaging activity [6].
  • Studies of single neuron activity in the LHA of Lys-deficient rats suggested that neuronal plasticity occurred [7].
 

Associations of lysine with other chemical compounds

  • In the structures with inhibitor bound, the catalytic lysine (Lys13 in loop-1) and the catalytic histidine (His95 in loop-4) adopt conformations similar to those observed in wild-type TIM, but very different from the monoTIM structure [8].
 

Gene context of lysine

  • Taken together these observations indicate that the N-terminal amino group of [Tyr8]bradykinin is bound to analogous positions of the rat and of the human B2 receptor, i.e. [Tyr8]bradykinin's N terminus is bound adjacent to Lys172 of the human and Lys174 of the rat B2 receptor [3].

References

  1. Lys and fibrinogen binding of wild-type (Trp72) and mutant (Arg72) human apo(a) kringle IV-10 expressed in E coli and CHO cells. Klezovitch, O., Scanu, A.M. Arterioscler. Thromb. Vasc. Biol. (1996) [Pubmed]
  2. The Saccharomyces cerevisiae NPS1 gene, a novel CDC gene which encodes a 160 kDa nuclear protein involved in G2 phase control. Tsuchiya, E., Uno, M., Kiguchi, A., Masuoka, K., Kanemori, Y., Okabe, S., Mikayawa, T. EMBO J. (1992) [Pubmed]
  3. The N-terminal amino group of [Tyr8]bradykinin is bound adjacent to analogous amino acids of the human and rat B2 receptor. AbdAlla, S., Jarnagin, K., Müller-Esterl, W., Quitterer, U. J. Biol. Chem. (1996) [Pubmed]
  4. Aspartate kinase 2. A candidate gene of a quantitative trait locus influencing free amino acid content in maize endosperm. Wang, X., Stumpf, D.K., Larkins, B.A. Plant Physiol. (2001) [Pubmed]
  5. Identification of lysine350 of yeast deoxyhypusine synthase as the site of enzyme intermediate formation. Wolff, E.C., Park, M.H. Yeast (1999) [Pubmed]
  6. At the interface: crystal structures of phospholipases A2. Ward, R.J., de Azevedo, W.F., Arni, R.K. Toxicon (1998) [Pubmed]
  7. Hypothalamic control of amino acid appetite. Torii, K., Kondoh, T., Mori, M., Ono, T. Ann. N. Y. Acad. Sci. (1998) [Pubmed]
  8. Three new crystal structures of point mutation variants of monoTIM: conformational flexibility of loop-1, loop-4 and loop-8. Borchert, T.V., Kishan, K.V., Zeelen, J.P., Schliebs, W., Thanki, N., Abagyan, R., Jaenicke, R., Wierenga, R.K. Structure (1995) [Pubmed]
 
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