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Chemical Compound Review

Desosamine     (2R,3S,5R)-3-dimethylamino- 2,5-dihydroxy...

Synonyms: AG-K-85844, CHEBI:32540, CTK5A7447, AR-1E8983, AC1L52XO, ...
 
 
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Disease relevance of Desosamine

  • In our study of the biosynthesis of D-desosamine in Streptomyces venezuelae, we have cloned and sequenced the entire desosamine biosynthetic cluster [1].
 

High impact information on Desosamine

  • Immediately downstream is a set of genes for desosamine biosynthesis (des) and macrolide ring hydroxylation [2].
  • A central feature of the enzyme-substrate interaction involves anchoring of the desosamine residue in two alternative binding pockets based on a series of distinct amino acid residues that form a salt bridge and a hydrogen-bonding network with the deoxysugar C3' dimethylamino group [3].
  • Construction of desosamine containing polyketide libraries using a glycosyltransferase with broad substrate specificity [4].
  • The deduced product of one of the genes, desR, in this cluster shows high sequence homology to beta-glucosidases, which catalyze the hydrolysis of the glycosidic linkages, a function not required for the biosynthesis of desosamine [1].
  • The results with acetylated derivatives support an ionic interaction between E119 of the MTLR with the N+ of the desosamine sugar in EM-A, but not with the N+ of the free amine group in motilin [5].
 

Biological context of Desosamine

  • In two impurities the desosamine sugar was involved with changes in the degrees of methylation of the amino group [6].
  • Esterification of the desosamine in the beta position of the N(CH3)2 group leads to lower pKa values for the R--N+ H(CH3)2 <--> [R--N (CH3)2] + H+ equilibrium [7].
 

Associations of Desosamine with other chemical compounds

  • In the erythromycin derivatives esterification at the beta position to the N(CH3)2 group of the desosamine reduces the degree of freedom of the macrocyclic lactone ring which corresponds to conformation A only [8].
 

Gene context of Desosamine

  • In the IRMPD spectra, a diagnostic fragment ion assigned as the desosamine ion is a dominant ion that is not observed in the CAD spectra because of the higher m/z limit of the storage range required during collisional activation [9].
  • As the 3'-dimethyl-amino function of the desosamine is metabolized and responsible for the interaction with cytochrome P450, its position, mobility and steric hindrance in the proximity of this functional group are related to its biological properties [8].

References

  1. Beta-glucosylation as a part of self-resistance mechanism in methymycin/pikromycin producing strain Streptomyces venezuelae. Zhao, L., Beyer, N.J., Borisova, S.A., Liu, H.W. Biochemistry (2003) [Pubmed]
  2. A gene cluster for macrolide antibiotic biosynthesis in Streptomyces venezuelae: architecture of metabolic diversity. Xue, Y., Zhao, L., Liu, H.W., Sherman, D.H. Proc. Natl. Acad. Sci. U.S.A. (1998) [Pubmed]
  3. The structural basis for substrate anchoring, active site selectivity, and product formation by P450 PikC from Streptomyces venezuelae. Sherman, D.H., Li, S., Yermalitskaya, L.V., Kim, Y., Smith, J.A., Waterman, M.R., Podust, L.M. J. Biol. Chem. (2006) [Pubmed]
  4. Construction of desosamine containing polyketide libraries using a glycosyltransferase with broad substrate specificity. Tang, L., McDaniel, R. Chem. Biol. (2001) [Pubmed]
  5. Motilin and erythromycin-A share a common binding site in the third transmembrane segment of the motilin receptor. Xu, L., Depoortere, I., Vertongen, P., Waelbroeck, M., Robberecht, P., Peeters, T.L. Biochem. Pharmacol. (2005) [Pubmed]
  6. Characterization of impurities in dirithromycin by liquid chromatography/ion trap mass spectrometry. Diana, J., Govaerts, C., Hoogmartens, J., Van Schepdael, A., Adams, E. Journal of chromatography. A. (2006) [Pubmed]
  7. pH effects on the N-demethylation and formation of the cytochrome P-450 iron II nitrosoalkane complex for erythromycin derivatives. Delaforge, M., Ladam, P., Bouillé, G., Benarous, J.G., Jaouen, M., Girault, J.P. Chem. Biol. Interact. (1992) [Pubmed]
  8. Conformational change due to esterification of hydroxy groups in erythromycin A and its major metabolite: analysis of these derivatives with different biological properties using NMR and molecular dynamics (MD) data. Ladam, P., Gharbi-Benarous, J., Delaforge, M., van Calsteren, M.R., Jankowski, C.K., Girault, J.P. Bioorg. Med. Chem. (1995) [Pubmed]
  9. Characterization of erythromycin analogs by collisional activated dissociation and infrared multiphoton dissociation in a quadrupole ion trap. Crowe, M.C., Brodbelt, J.S., Goolsby, B.J., Hergenrother, P. J. Am. Soc. Mass Spectrom. (2002) [Pubmed]
 
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