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Gene Review

2.5  -  single-stranded DNA-binding protein

Yersinia phage phiYeO3-12

 
 
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Disease relevance of 2.5

  • Two proteins encoded by bacteriophage T7, the gene 2.5 single-stranded DNA binding protein and the gene 4 helicase, mediate homologous DNA strand exchange [1].
  • After infection of E. coli with T7 delta 2.5, host DNA synthesis is shut off, and phage DNA synthesis is reduced to < 1% of phage DNA synthesis in wild-type T7-infected E. coli cells as measured by incorporation of [3H]thymidine [2].
  • T7 phages that contain null mutants of gene 2.5 were constructed by homologous recombination [2].
 

High impact information on 2.5

  • Gene 2.5 protein stimulates homologous base pairing of two DNA molecules containing complementary single-stranded regions [1].
  • The defects in growth and DNA replication are overcome by wild-type gene 2.5 protein expressed from a plasmid harboring the T7 gene 2.5 [2].
  • We have identified a single amino acid residue in gene 2.5 protein, arginine 82, that is critical for its DNA annealing activity [3].
  • In bacteriophage T7-infected cells, the product of viral gene 2.5, a single-stranded DNA-binding protein, performs this function [3].
  • Gene 2.5 of bacteriophage T7 is an essential gene that encodes a single-stranded DNA-binding protein (gp2.5) [4].
 

Biological context of 2.5

  • 5. By screening a library of randomly mutated plasmids encoding gene 2.5, we identified 20 different single amino acid alterations in gene 2.5 protein that are lethal in vivo [5].
  • A truncated gene 2.5 protein (GP2.5-delta 21C) was constructed by in vitro mutagenesis and lacks the 21 carboxyl-terminal amino acids found in wild-type gene 2.5 protein, 15 of which are acidic [6].
  • 5. Neither of the suppressor mutations for the op1 mutation suppressed other gene 2.5 mutations, ts2.5 and am2.5-2 [7].
 

Associations of 2.5 with chemical compounds

  • Whereas transcription buffer containing 2.0-2.5 mM Mn(2+) supports T7 RNA polymerase-mediated insertion of 8-N(3)AMP into RNA, a mixture of 2.5 mM Mn(2+) and 2.5 mM Mg(2+) further improves the yield of 8-N(3)AMP-containing transcript [8].
  • By 5 min after infection the activity of alc mutants was 1.5 to 2.5 times greater than that of the wild type on various cytosine-containing DNA templates, whereas there was little or no difference in activity on T4 HMdC-DNA, in agreement with the in vivo specificity [9].
 

Analytical, diagnostic and therapeutic context of 2.5

  • GP2.5-delta 21C has been purified to apparent homogeneity from cells overexpressing its cloned gene and has a conformation that differs from that of the wild-type gene 2.5 protein as judged by its circular dichroism spectra [6].
  • Gene 2.5 protein-R82C condenses single-stranded M13 DNA in a manner similar to wild-type protein when viewed by electron microscopy [3].

References

  1. Single-stranded DNA binding protein and DNA helicase of bacteriophage T7 mediate homologous DNA strand exchange. Kong, D., Richardson, C.C. EMBO J. (1996) [Pubmed]
  2. Bacteriophage T7 gene 2.5 protein: an essential protein for DNA replication. Kim, Y.T., Richardson, C.C. Proc. Natl. Acad. Sci. U.S.A. (1993) [Pubmed]
  3. A single-stranded DNA-binding protein of bacteriophage T7 defective in DNA annealing. Rezende, L.F., Willcox, S., Griffith, J.D., Richardson, C.C. J. Biol. Chem. (2003) [Pubmed]
  4. The carboxyl-terminal domain of bacteriophage T7 single-stranded DNA-binding protein modulates DNA binding and interaction with T7 DNA polymerase. He, Z.G., Rezende, L.F., Willcox, S., Griffith, J.D., Richardson, C.C. J. Biol. Chem. (2003) [Pubmed]
  5. Essential amino acid residues in the single-stranded DNA-binding protein of bacteriophage T7. Identification of the dimer interface. Rezende, L.F., Hollis, T., Ellenberger, T., Richardson, C.C. J. Biol. Chem. (2002) [Pubmed]
  6. Acidic carboxyl-terminal domain of gene 2.5 protein of bacteriophage T7 is essential for protein-protein interactions. Kim, Y.T., Richardson, C.C. J. Biol. Chem. (1994) [Pubmed]
  7. Suppression of bacteriophage T7 ssb mutation with host ssb. Shimizu, K., Araki, H., Ogawa, H. J. Mol. Biol. (1993) [Pubmed]
  8. Template-dependent incorporation of 8-N3AMP into RNA with bacteriophage T7 RNA polymerase. Gopalakrishna, S., Gusti, V., Nair, S., Sahar, S., Gaur, R.K. RNA (2004) [Pubmed]
  9. Inhibition of transcription of cytosine-containing DNA in vitro by the alc gene product of bacteriophage T4. Drivdahl, R.H., Kutter, E.M. J. Bacteriol. (1990) [Pubmed]
 
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