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PEX6  -  peroxisomal biogenesis factor 6

Homo sapiens

Synonyms: PAF-2, PAF2, PBD4A, PDB4B, PXAAA1, ...
 
 
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Disease relevance of PEX6

 

High impact information on PEX6

  • Thus, Pex26 recruits Pex6-Pex1 complexes to peroxisomes [3].
  • Epitope-tagged Pex6 and Pex1 are discernible as puncta in normal CHO-K1 cells, but not in PEX26-defective cells [3].
  • We have identified the human gene PXAAA1 based upon its similarity to PpPAS5, a gene required for peroxisome assembly in the yeast Pichia pastoris [4].
  • Expression of PXAAA1 restored peroxisomal protein import in fibroblasts from 16 unrelated members of complementation group 4 (CG4) of the PBD [4].
  • To clarify the novel pathogenic gene of PBD, we cloned the full-length human PAF-2 cDNA that morphologically and biochemically restores peroxisomes of group C Zellweger fibroblasts (the same as group 4 in the Kennedy-Krieger Institute) and identified two pathogenic mutations in the PAF-2 gene in two patients with group C Zellweger syndrome [5].
 

Biological context of PEX6

  • This mutation analysis will aid in understanding the functions of the PEX6 protein in peroxisomal biogenesis [6].
  • The human PEX6 gene consists of 17 exons and 16 introns, spanning about 14kb [6].
  • In addition, ZP92 transfected with G708D in PEX6, the counterpart to the temperature-sensitive mutation G843D in PEX1, revealed no temperature-sensitive phenotype [7].
  • This patient was a compound heterozygote for PEX6 gene alleles [8].
  • Peroxisomes were morphologically and biochemically formed at 30 degrees C but not at 37 degrees C. This patient was homozygous for a missense mutation, T-->C at nucleotide 170 resulting in a change from leucine to proline at amino acid 57 (L57P) in Pex6p [7].
 

Anatomical context of PEX6

 

Associations of PEX6 with chemical compounds

  • Together with the requirement of PEX6 for appressorial melanization, our findings suggest that peroxisomal metabolic pathways play functional roles in appressorial melanization and subsequent host invasion steps, and the latter step requires the glyoxylate cycle [12].
  • Electron microscopic analysis revealed restored peroxisomes in methanol-induced cold-sensitive pex6 cells at both permissive and restrictive temperatures [13].
  • An unusual phenotype of the pex1 and pex6 mutants was that they grew poorly with glucose as the carbon source, but nearly wild type with galactose, which suggested impaired hexokinase function and that C. neoformans peroxisomes might function analogously to the glycosomes of the trypanosomid parasites [14].
 

Other interactions of PEX6

  • The validity of this approach is demonstrated by its use in identifying PXR1 as the human orthologue of the Pichia pastoris PAS8 gene and PXAAA1 as a human homologue of the Pichia pastoris PAS5 gene [15].
  • In the early stage of complementation by PEX6 cDNA, catalase and acyl-CoA oxidase accumulated in the lumen of the double-membraned loops [10].

References

  1. A PEX6-defective peroxisomal biogenesis disorder with severe phenotype in an infant, versus mild phenotype resembling Usher syndrome in the affected parents. Raas-Rothschild, A., Wanders, R.J., Mooijer, P.A., Gootjes, J., Waterham, H.R., Gutman, A., Suzuki, Y., Shimozawa, N., Kondo, N., Eshel, G., Espeel, M., Roels, F., Korman, S.H. Am. J. Hum. Genet. (2002) [Pubmed]
  2. Rhythm versus rate control after ablation and pacing for paroxysmal atrial fibrillation: clinical implications of the PAF 2 trial. Brignole, M. Cardiac electrophysiology review. (2003) [Pubmed]
  3. The pathogenic peroxin Pex26p recruits the Pex1p-Pex6p AAA ATPase complexes to peroxisomes. Matsumoto, N., Tamura, S., Fujiki, Y. Nat. Cell Biol. (2003) [Pubmed]
  4. The peroxisome biogenesis disorder group 4 gene, PXAAA1, encodes a cytoplasmic ATPase required for stability of the PTS1 receptor. Yahraus, T., Braverman, N., Dodt, G., Kalish, J.E., Morrell, J.C., Moser, H.W., Valle, D., Gould, S.J. EMBO J. (1996) [Pubmed]
  5. Human peroxisome assembly factor-2 (PAF-2): a gene responsible for group C peroxisome biogenesis disorder in humans. Fukuda, S., Shimozawa, N., Suzuki, Y., Zhang, Z., Tomatsu, S., Tsukamoto, T., Hashiguchi, N., Osumi, T., Masuno, M., Imaizumi, K., Kuroki, Y., Fujiki, Y., Orii, T., Kondo, N. Am. J. Hum. Genet. (1996) [Pubmed]
  6. Genomic structure and identification of 11 novel mutations of the PEX6 (peroxisome assembly factor-2) gene in patients with peroxisome biogenesis disorders. Zhang, Z., Suzuki, Y., Shimozawa, N., Fukuda, S., Imamura, A., Tsukamoto, T., Osumi, T., Fujiki, Y., Orii, T., Wanders, R.J., Barth, P.G., Moser, H.W., Paton, B.C., Besley, G.T., Kondo, N. Hum. Mutat. (1999) [Pubmed]
  7. Temperature-sensitive mutation of PEX6 in peroxisome biogenesis disorders in complementation group C (CG-C): comparative study of PEX6 and PEX1. Imamura, A., Shimozawa, N., Suzuki, Y., Zhang, Z., Tsukamoto, T., Fujiki, Y., Orii, T., Osumi, T., Wanders, R.J., Kondo, N. Pediatr. Res. (2000) [Pubmed]
  8. The peroxin Pex6p gene is impaired in peroxisomal biogenesis disorders of complementation group 6. Matsumoto, N., Tamura, S., Moser, A., Moser, H.W., Braverman, N., Suzuki, Y., Shimozawa, N., Kondo, N., Fujiki, Y. J. Hum. Genet. (2001) [Pubmed]
  9. Alternative splicing suggests extended function of PEX26 in peroxisome biogenesis. Weller, S., Cajigas, I., Morrell, J., Obie, C., Steel, G., Gould, S.J., Valle, D. Am. J. Hum. Genet. (2005) [Pubmed]
  10. Peroxisomes are formed from complex membrane structures in PEX6-deficient CHO cells upon genetic complementation. Hashiguchi, N., Kojidani, T., Imanaka, T., Haraguchi, T., Hiraoka, Y., Baumgart, E., Yokota, S., Tsukamoto, T., Osumi, T. Mol. Biol. Cell (2002) [Pubmed]
  11. Functional association of the AAA complex and the peroxisomal importomer. Rosenkranz, K., Birschmann, I., Grunau, S., Girzalsky, W., Kunau, W.H., Erdmann, R. FEBS J. (2006) [Pubmed]
  12. Multiple Contributions of Peroxisomal Metabolic Function to Fungal Pathogenicity in Colletotrichum lagenarium. Asakura, M., Okuno, T., Takano, Y. Appl. Environ. Microbiol. (2006) [Pubmed]
  13. Identification of intragenic mutations in the Hansenula polymorpha PEX6 gene that affect peroxisome biogenesis and methylotrophic growth. Stasyk, O.V., Nazarko, V.Y., Pochapinsky, O.D., Nazarko, T.Y., Veenhuis, M., Sibirny, A.A. FEMS Yeast Res. (2003) [Pubmed]
  14. Peroxisome Function Regulates Growth on Glucose in the Basidiomycete Fungus Cryptococcus neoformans. Idnurm, A., Giles, S.S., Perfect, J.R., Heitman, J. Eukaryotic Cell (2007) [Pubmed]
  15. From expressed sequence tags to peroxisome biogenesis disorder genes. Dodt, G., Braverman, N., Valle, D., Gould, S.J. Ann. N. Y. Acad. Sci. (1996) [Pubmed]
 
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