The world's first wiki where authorship really matters (Nature Genetics, 2008). Due credit and reputation for authors. Imagine a global collaborative knowledge base for original thoughts. Search thousands of articles and collaborate with scientists around the globe.

wikigene or wiki gene protein drug chemical gene disease author authorship tracking collaborative publishing evolutionary knowledge reputation system wiki2.0 global collaboration genes proteins drugs chemicals diseases compound
Hoffmann, R. A wiki for the life sciences where authorship matters. Nature Genetics (2008)
 

Links

 

Gene Review

RAD7  -  Rad7p

Saccharomyces cerevisiae S288c

Synonyms: DNA repair protein RAD7, J1665, YJR052W
 
 
Welcome! If you are familiar with the subject of this article, you can contribute to this open access knowledge base by deleting incorrect information, restructuring or completely rewriting any text. Read more.
 

Disease relevance of RAD7

 

High impact information on RAD7

  • Recently, we identified a stable subcomplex containing the yeast Rad7 and Rad16 proteins [2].
  • This evidence suggests that the Sir3 protein interacts with the Rad7 protein to allow the nucleotide excision repair complex access to transcriptionally inactive chromatin [3].
  • Expression of a telomeric copy of the URA3 gene was stimulated in a rad7-delta mutant, suggesting that repair of lesions in the absence of Rad7 can result in the activation of transcriptionally silenced genes [3].
  • RAD7-dependent DNA repair of transcriptionally silent chromatin was shown not to induce expression of a telomeric copy of the URA3 gene, suggesting that repair of transcriptionally silent chromatin differs from transcriptionally active chromatin [3].
  • The proportions of 5-FOA-resistant cells in cultures from isogenic RAD+ and rad7-delta strains containing a telomeric URA3 gene were similar, suggesting that the RAD7 gene is not involved in the production or structure of transcriptionally silent chromatin at the telomeres [3].
 

Biological context of RAD7

  • We have used the two-hybrid system to identify proteins that interact with the product of RAD7, a gene involved in DNA repair [3].
  • Transcription-independent NER of a plasmid substrate was defective in rad7, rad16, and rad23 mutant extracts [4].
  • The nucleotide sequence of a 2.2-kb DNA fragment which contains the complete RAD7 gene was determined [5].
  • The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating type loci, are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae [6].
  • In the latter case, the induction of RAD7 and RAD16 may increase the turnover of complexes stalled in nontranscribed DNA so as to increase the availability of NER proteins for the repair of CPDs and EIIISS in all regions of the genome [7].
 

Physical interactions of RAD7

  • We previously isolated a stable heterotrimeric complex of Rad7/Rad16/Abf1 from yeast which functions in the conserved global genome repair (GGR) pathway [8].
 

Regulatory relationships of RAD7

  • In UV-irradiated JG-1 (rad1-1), rad3 and rad11 as well as in DEB-inactivated rad7, rad11, rad19 and rad20 the inability of LHR is a constitutive phenomenon and cannot be overcome by exogenous energy supply [9].
 

Other interactions of RAD7

  • Interaction of the yeast RAD7 and SIR3 proteins: implications for DNA repair and chromatin structure [3].
  • Additionally, interaction between the Rad7 and Rad16 proteins was demonstrated in vitro [4].
  • Also translated regions of the COR gene RAD7 share similarities with both of the two adjacent ARC genes, ANP1 and RAD23 [10].
  • Three additional genes involved in pyrimidine dimer removal in Saccharomyces cerevisiae: RAD7, RAD14 and MMS19 [11].
  • This observation is of interest since, in contrast to the rad7 delta or the rad23 delta mutations, the rad1 delta mutant is very UV sensitive and highly excision defective [12].

References

  1. A fragment of the yeast DNA repair protein Rad4 confers toxicity to E. coli and is required for its interaction with Rad7 protein. Wei, S., Friedberg, E.C. Mutat. Res. (1998) [Pubmed]
  2. Yeast autonomously replicating sequence binding factor is involved in nucleotide excision repair. Reed, S.H., Akiyama, M., Stillman, B., Friedberg, E.C. Genes Dev. (1999) [Pubmed]
  3. Interaction of the yeast RAD7 and SIR3 proteins: implications for DNA repair and chromatin structure. Paetkau, D.W., Riese, J.A., MacMorran, W.S., Woods, R.A., Gietz, R.D. Genes Dev. (1994) [Pubmed]
  4. The RAD7, RAD16, and RAD23 genes of Saccharomyces cerevisiae: requirement for transcription-independent nucleotide excision repair in vitro and interactions between the gene products. Wang, Z., Wei, S., Reed, S.H., Wu, X., Svejstrup, J.Q., Feaver, W.J., Kornberg, R.D., Friedberg, E.C. Mol. Cell. Biol. (1997) [Pubmed]
  5. RAD7 gene of Saccharomyces cerevisiae: transcripts, nucleotide sequence analysis, and functional relationship between the RAD7 and RAD23 gene products. Perozzi, G., Prakash, S. Mol. Cell. Biol. (1986) [Pubmed]
  6. The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating type loci, are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae. Verhage, R., Zeeman, A.M., de Groot, N., Gleig, F., Bang, D.D., van de Putte, P., Brouwer, J. Mol. Cell. Biol. (1994) [Pubmed]
  7. The Saccharomyces cerevisiae RAD7 and RAD16 genes are required for inducible excision of endonuclease III sensitive-sites, yet are not needed for the repair of these lesions following a single UV dose. Scott, A.D., Waters, R. Mutat. Res. (1997) [Pubmed]
  8. The yeast Rad7/Rad16/Abf1 complex generates superhelical torsion in DNA that is required for nucleotide excision repair. Yu, S., Owen-Hughes, T., Friedberg, E.C., Waters, R., Reed, S.H. DNA Repair (Amst.) (2004) [Pubmed]
  9. Energy requirement for liquid holding recovery from UV- and DEB-induced damage in rad mutants of Saccharomyces cerevisiae. Zaborowska, D., Swietlińska, Z., Haładus, E., Zuk, J. Acta Microbiol. Pol. (1980) [Pubmed]
  10. The gene clusters ARC and COR on chromosomes 5 and 10, respectively, of Saccharomyces cerevisiae share a common ancestry. Melnick, L., Sherman, F. J. Mol. Biol. (1993) [Pubmed]
  11. Three additional genes involved in pyrimidine dimer removal in Saccharomyces cerevisiae: RAD7, RAD14 and MMS19. Prakash, L., Prakash, S. Mol. Gen. Genet. (1979) [Pubmed]
  12. Interactions of the RAD7 and RAD23 excision repair genes of Saccharomyces cerevisiae with DNA repair genes in different epistasis groups. Schiestl, R.H., Prakash, S. Curr. Genet. (1989) [Pubmed]
 
WikiGenes - Universities