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Hoffmann, R. A wiki for the life sciences where authorship matters. Nature Genetics (2008)
 
MeSH Review

Mya

 
 
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Disease relevance of Mya

  • The Raman spectra of cyanobacterial species, Gloecapsa and Nostoc, in clear gypsum crystals from the Haughton Crater, Devon Island, Canadian High Arctic, site of a meteorite impact during the Miocene some 23 Mya, have been recorded using several visible and near-infrared excitation wavelengths [1].
  • Isolation and characterization of Vibrio parahaemolyticus from Cape Cod soft-shell clams (Mya arenaria) [2].
  • 5-bromodeoxyuridine induction of hematopoietic neoplasia and retrovirus activation in the soft-shell clam, Mya arenaria [3].
 

High impact information on Mya

  • From approximately 70 million years ago (Mya) until approximately 40 Mya, three distinct L1 lineages were simultaneously active in the genome of ancestral primates [4].
  • The most prolific L1 families (families L1PA8 to L1PA3) amplified between 40 and 12 Mya [4].
  • The majority of human orthologs of 195 CDY groups that could be dated by the molecular clock appear to be duplicated between 300 and 680 Myr with a mean at 488 million years ago (Mya) [5].
  • According to this approach, platyrrhine primates colonized South America between 37.0 +/- 3.0 Mya (or 38.9 +/- 4.0 Mya without IRBP) and 16.8 +/- 2.3 (or 20.1 +/- 3.3) Mya, and caviomorph rodents between 45.4 +/- 4.1 (or 43.7 +/- 4.8) Mya and 36.7 +/- 3.7 (or 35.8 +/- 4.3) Mya [6].
  • Expression of homologues for p53 and p73 in the softshell clam (Mya arenaria), a naturally-occurring model for human cancer [7].
 

Biological context of Mya

 

Anatomical context of Mya

  • Much higher proportions of TBT:total BT were characteristic of Mya (>80% in the digestive gland, remaining tissue and gonad) implying that slow degradation rates account for the relatively high levels of TBT in this species [10].
 

Associations of Mya with chemical compounds

  • An aryl hydrocarbon receptor (AHR) homologue from the soft-shell clam, Mya arenaria: evidence that invertebrate AHR homologues lack 2,3,7,8-tetrachlorodibenzo-p-dioxin and beta-naphthoflavone binding [11].
  • The apparent timing of speciation in the Stegolepis alliance about 6-12 Mya occurred long after the tepuis began to be dissected from each other as the Atlantic rifted approximately 90 Mya [12].
  • 2. Extracts of dissected SO cell bodies inhibited spontaneous ventricular contractions of the clam Mya arenaria, indicating the presence of ACh [13].
  • Genotoxicity analyses were performed on dichloromethane extracts of Mya arenaria and Mytilus edulis collected downstream from several aluminum refineries and forestry products industries known to produce and release genotoxic substances [14].
  • In nine batches of sea bivalves collected from Chinese coastal cities during the year of 2000 to 2002, a special sample named Mya arenaria was found to have strong ability of butyltin accumulation compared with the other sampled bivalves in the corresponding batches [15].
 

Gene context of Mya

  • A HECT E3 ubiquitin-protein ligase with sequence similarity to E6AP does not target p53 for degradation in the softshell clam (Mya arenaria) [8].
  • While hundreds of scaptomyzoid species are found in the Hawaiian archipelago, many fewer are found elsewhere around the world, suggesting that they could have originated outside Hawaii. The drosophiloid lineage is strictly endemic to Hawaii and originated little more than 10 Mya, according to the alcohol dehydrogenase molecular clock [16].
  • Thus, the DP region seems to have originated through a recombinational event which brought together a DQB gene and a DRA gene (perhaps approximately 120 Mya) [17].
  • Applying this test to the kringle-4 domain of apo(a) and plasminogen gene, we demonstrate that the separation between the two genes by duplication dates back at about 90 Mya immediately before the radiation of mammals [18].
  • Isolation of the cDNA and characterization of mRNA expression of ribosomal protein S19 from the soft-shell clam, Mya arenaria [19].

References

  1. Raman spectroscopic analysis of cyanobacterial gypsum halotrophs and relevance for sulfate deposits on Mars. Edwards, H.G., Villar, S.E., Parnell, J., Cockell, C.S., Lee, P. The Analyst. (2005) [Pubmed]
  2. Isolation and characterization of Vibrio parahaemolyticus from Cape Cod soft-shell clams (Mya arenaria). Earle, P.M., Crisley, F.D. Applied microbiology. (1975) [Pubmed]
  3. 5-bromodeoxyuridine induction of hematopoietic neoplasia and retrovirus activation in the soft-shell clam, Mya arenaria. Oprandy, J.J., Chang, P.W. J. Invertebr. Pathol. (1983) [Pubmed]
  4. Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates. Khan, H., Smit, A., Boissinot, S. Genome Res. (2006) [Pubmed]
  5. New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes. Panopoulou, G., Hennig, S., Groth, D., Krause, A., Poustka, A.J., Herwig, R., Vingron, M., Lehrach, H. Genome Res. (2003) [Pubmed]
  6. Arrival and diversification of caviomorph rodents and platyrrhine primates in South america. Poux, C., Chevret, P., Huchon, D., de Jong, W.W., Douzery, E.J. Syst. Biol. (2006) [Pubmed]
  7. Expression of homologues for p53 and p73 in the softshell clam (Mya arenaria), a naturally-occurring model for human cancer. Kelley, M.L., Winge, P., Heaney, J.D., Stephens, R.E., Farell, J.H., Van Beneden, R.J., Reinisch, C.L., Lesser, M.P., Walker, C.W. Oncogene (2001) [Pubmed]
  8. A HECT E3 ubiquitin-protein ligase with sequence similarity to E6AP does not target p53 for degradation in the softshell clam (Mya arenaria). Olberding, K.E., Kelley, M.L., Butler, R.A., Van Beneden, R.J. Mutat. Res. (2004) [Pubmed]
  9. Kinetics of alanine uptake by the gills of the soft shelled clam Mya arenaria. Stewart, M.G., Bamford, D.R. Comparative biochemistry and physiology. A, Comparative physiology. (1975) [Pubmed]
  10. Distribution of organotin compounds in tissues of mussels Mytilus edulis and clams Mya arenaria. Harino, H., O'Hara, S.C., Burt, G.R., Chesman, B.S., Langston, W.J. Chemosphere (2005) [Pubmed]
  11. An aryl hydrocarbon receptor (AHR) homologue from the soft-shell clam, Mya arenaria: evidence that invertebrate AHR homologues lack 2,3,7,8-tetrachlorodibenzo-p-dioxin and beta-naphthoflavone binding. Butler, R.A., Kelley, M.L., Powell, W.H., Hahn, M.E., Van Beneden, R.J. Gene (2001) [Pubmed]
  12. Molecular evolution, adaptive radiation, and geographic diversification in the amphiatlantic family Rapateaceae: evidence from ndhF sequences and morphology. Givnish, T.J., Evans, T.M., Zjhra, M.L., Patterson, T.B., Berry, P.E., Sytsma, K.J. Evolution (2000) [Pubmed]
  13. A cholinergic modulatory interneuron in the feeding system of the snail, Lymnaea. Yeoman, M.S., Parish, D.C., Benjamin, P.R. J. Neurophysiol. (1993) [Pubmed]
  14. Detection of genotoxic substances in bivalve molluscs from the Saguenay Fjord (Canada), using the SOS chromotest. White, P.A., Blaise, C., Rasmussen, J.B. Mutat. Res. (1997) [Pubmed]
  15. Preliminary investigation of a sensitive biomarker of organotin pollution in Chinese coastal aquatic environment and marine organisms. Qun-fang, Z., Zhong-yang, L., Gui-bin, J., Rui-qiang, Y. Environ. Pollut. (2003) [Pubmed]
  16. The molecular evolution of the alcohol dehydrogenase locus and the phylogeny of Hawaiian Drosophila. Thomas, R.H., Hunt, J.A. Mol. Biol. Evol. (1991) [Pubmed]
  17. Evolutionary relationships of class II major-histocompatibility-complex genes in mammals. Hughes, A.L., Nei, M. Mol. Biol. Evol. (1990) [Pubmed]
  18. The peculiar evolution of apolipoprotein(a) in human and rhesus macaque. Pesole, G., Gerardi, A., di Jeso, F., Saccone, C. Genetics (1994) [Pubmed]
  19. Isolation of the cDNA and characterization of mRNA expression of ribosomal protein S19 from the soft-shell clam, Mya arenaria. Rhodes, L.D., Van Beneden, R.J. Gene (1997) [Pubmed]
 
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