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Hoffmann, R. A wiki for the life sciences where authorship matters. Nature Genetics (2008)
 
MeSH Review

Raphanus

 
 
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High impact information on Raphanus

  • Germination of radish (Raphanus sativus cv Eterna) seeds can be inhibited by far-red light (high-irradiance reaction of phytochrome) or abscisic acid (ABA) [1].
  • In this study, six cDNAs coding for protein-serine/threonine kinases (PS/TKs) are presented; they have been isolated from libraries obtained from the demosponges Geodia cydonium and Suberites domuncula and from the calcareous sponge Sycon raphanus [2].
  • A novel alpha-L-fucosyltransferase capable of transferring L-fucose (L-Fuc) from GDP-L-Fuc to the O-2 of alpha-L-arabinofuranosyl residue (GDP-L-Fuc:alpha-L-arabinofuranoside 2-alpha-L-fucosyltransferase) has been found in the microsomal fraction of primary roots from 6-d-old radish (Raphanus sativus L.) seedlings [3].
  • An unusual case of 'uncompetitive activation' by ascorbic acid: purification and kinetic properties of a myrosinase from Raphanus sativus seedlings [4].
  • 1430nk showed a reduction in virulence on the host plant Chinese radish (Raphanus sativus L. var. radiculus Pers.) and produced less extracellular polysaccharide (EPS) than did the wild-type strain in the absence of added zinc [5].
 

Biological context of Raphanus

  • Using a set of CMS gene-specific polymerase chain reaction primers, we compared female and CMS gene frequencies in 18 natural populations of Raphanus sativus [6].
  • In addition to column studies, a growth chamber study was conducted to evaluate the kinetics of nitrification in zeoponic substrates used to grow radishes (Raphanus sativus L.). The zeoponic substrate provided a readily available source of NH4+, and nitrifying bacteria were active in the substrate [7].
  • The cDNA clone of EST clone 39 containing the entire open reading frame was obtained and designated as RsCOL1 (Raphanus sativus CONSTANS LIKE 1) [8].
  • Lettuce (Lactuca sativa L.) cultivar 'Waldmann's Green' and radish (Raphanus sativus L.) cultivar 'Giant White Globe' were grown both in the field and in controlled environments, where hydroponic nutrient solution, light, and temperature were regulated, and where CO2 levels were controlled at 400, 1000, 5000, or 10,000 ppm [9].
 

Associations of Raphanus with chemical compounds

  • Rs-AFP2 is a 51 amino acid cysteine-rich peptide isolated from radish (Raphanus sativus) seeds that exhibits potent inhibitory activity against filamentous fungi [10].
  • Malate content of picoliter samples of Raphanus sativus cytoplasm [11].
  • The specificity of binding and the complete precipitation of beta-fructosidase activity by the insolubilized lectin imply that all beta-fructosidase activity measured in Raphanus sativus seedling extracts is linked to (a) glycoprotein form(s) of this enzyme [12].
  • CDNA cloning of radish (Raphanus sativus) myrosinase and tissue-specific expression in root [13].
  • We purified and characterized a membrane-associated enzyme system from radish (Raphanus sativus L.) that is capable of converting acetyl-CoA into 3-hydroxy-3-methylglutaryl-coenzyme A (HMG-CoA) [14].
 

Gene context of Raphanus

  • Phylogenetic analysis shows that the S. raphanus TK is indeed the most ancient known member of the Fes/FER family of non-receptor PTKs [15].
  • Characterization and phylogenetic analysis of a cDNA encoding the Fes/FER related, non-receptor protein-tyrosine kinase in the marine sponge sycon raphanus [15].
  • Identification and expression of the kosena radish (Raphanus sativus cv. Kosena) homologue of the ogura radish CMS-associated gene, orf138 [16].
  • Altogether, the results reveal an unexpected diversification of homeobox genes in S. raphanus [17].
  • These results suggest that diversification of the SLG alleles of Raphanus and Brassica occurred before differentiation of these genera [18].

References

  1. Release of reactive oxygen intermediates (superoxide radicals, hydrogen peroxide, and hydroxyl radicals) and peroxidase in germinating radish seeds controlled by light, gibberellin, and abscisic acid. Schopfer, P., Plachy, C., Frahry, G. Plant Physiol. (2001) [Pubmed]
  2. Early evolution of metazoan serine/threonine and tyrosine kinases: identification of selected kinases in marine sponges. Kruse, M., Müller, I.M., Müller, W.E. Mol. Biol. Evol. (1997) [Pubmed]
  3. alpha-L-fucosyltransferases from radish primary roots. Misawa, H., Tsumuraya, Y., Kaneko, Y., Hashimoto, Y. Plant Physiol. (1996) [Pubmed]
  4. An unusual case of 'uncompetitive activation' by ascorbic acid: purification and kinetic properties of a myrosinase from Raphanus sativus seedlings. Shikita, M., Fahey, J.W., Golden, T.R., Holtzclaw, W.D., Talalay, P. Biochem. J. (1999) [Pubmed]
  5. The zinc uptake regulator Zur is essential for the full virulence of Xanthomonas campestris pv. campestris. Tang, D.J., Li, X.J., He, Y.Q., Feng, J.X., Chen, B., Tang, J.L. Mol. Plant Microbe Interact. (2005) [Pubmed]
  6. Variation of female frequency and cytoplasmic male-sterility gene frequency among natural gynodioecious populations of wild radish (Raphanus sativus L.). Murayama, K., Yahara, T., Terachi, T. Mol. Ecol. (2004) [Pubmed]
  7. Nitrification in a zeoponic substrate. McGilloway, R.L., Weaver, R.W., Ming, D.W., Gruener, J.E. Plant Soil (2003) [Pubmed]
  8. Expressed sequence tags of radish flower buds and characterization of a CONSTANS LIKE 1 gene. Moon, Y.H., Chae, S., Jung, J.Y., An, G. Mol. Cells (1998) [Pubmed]
  9. Effect of CO2 levels on nutrient content of lettuce and radish. McKeehen, J.D., Smart, D.J., Mackowiak, C.L., Wheeler, R.M., Nielsen, S.S. Advances in space research : the official journal of the Committee on Space Research (COSPAR). (1996) [Pubmed]
  10. Expression of functional Raphanus sativus antifungal protein in yeast. Alves, A.L., De Samblanx, G.W., Terras, F.R., Cammue, B.P., Broekaert, W.F. FEBS Lett. (1994) [Pubmed]
  11. Malate content of picoliter samples of Raphanus sativus cytoplasm. Bodson, M.J., Outlaw, W.H., Silvers, S.H. J. Histochem. Cytochem. (1991) [Pubmed]
  12. Evidence for the glycoprotein nature of radish beta-fructosidase. Faye, L., Berjonneau, C. Biochimie (1979) [Pubmed]
  13. CDNA cloning of radish (Raphanus sativus) myrosinase and tissue-specific expression in root. Hara, M., Fujii, Y., Sasada, Y., Kuboi, T. Plant Cell Physiol. (2000) [Pubmed]
  14. Aspects related to mevalonate biosynthesis in plants. Bach, T.J., Boronat, A., Caelles, C., Ferrer, A., Weber, T., Wettstein, A. Lipids (1991) [Pubmed]
  15. Characterization and phylogenetic analysis of a cDNA encoding the Fes/FER related, non-receptor protein-tyrosine kinase in the marine sponge sycon raphanus. Cetkovic, H., Müller, I.M., Müller, W.E., Gamulin, V. Gene (1998) [Pubmed]
  16. Identification and expression of the kosena radish (Raphanus sativus cv. Kosena) homologue of the ogura radish CMS-associated gene, orf138. Iwabuchi, M., Koizuka, N., Fujimoto, H., Sakai, T., Imamura, J. Plant Mol. Biol. (1999) [Pubmed]
  17. Homeobox gene diversification in the calcareous sponge, Sycon raphanus. Manuel, M., Le Parco, Y. Mol. Phylogenet. Evol. (2000) [Pubmed]
  18. Polymorphism of the S-locus glycoprotein gene (SLG) and the S-locus related gene (SLR1) in Raphanus sativus L. and self-incompatible ornamental plants in the Brassicaceae. Sakamoto, K., Kusaba, M., Nishio, T. Mol. Gen. Genet. (1998) [Pubmed]
 
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