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Gene Review

dtxR  -  diphtheria toxin repressor

Corynebacterium diphtheriae NCTC 13129

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Disease relevance of dtxR

 

High impact information on dtxR

  • Structure of the metal-ion-activated diphtheria toxin repressor/tox operator complex [6].
  • The diphtheria toxin repressor (DtxR) is a metal ion-activated transcriptional regulator that has been linked to the virulence of Corynebacterium diphtheriae [7].
  • We also demonstrate that the C-terminal src homology 3 (SH3)-like domain of DtxR functions to modulate repressor activity by (i) binding to the polyprolyl tether region between the N- and C-terminal domains, and (ii) destabilizing the ancillary binding site, leading to full inactivation of the repressor [8].
  • Gel electrophoretic mobility-shift assays show that Fe(2+) and not Fe(3+) activates DtxR for DNA binding [9].
  • Metal binding lowers the dimerization K(d) of DtxR from low micromolar to 33 nM [9].
 

Chemical compound and disease context of dtxR

 

Biological context of dtxR

  • DtxR is a two-domain protein that contains two structurally and functionally distinct metal binding sites [12].
  • The diphtheria toxin repressor (DtxR) is an Fe(II)-activated transcriptional regulator of iron homeostatic and virulence genes in Corynebacterium diphtheriae [12].
  • DNA sequence analysis of dtxR has shown that the M(r) 25,316 regulatory protein contains a single cysteine residue at position 102 [13].
  • Partial diploid analysis of strains carrying both native dtxR and alleles encoding either SAD2 or SAD3 demonstrate that these iron-independent mutants possess a positive dominant phenotype in the regulation of beta-galactosidase expression from a diphtheria tox promoter/operator-lacZ transcriptional fusion [14].
  • Expression of the cloned dtxR determinant did not affect the phenotype of C. diphtheriae C7(beta) [15].
 

Associations of dtxR with chemical compounds

  • Together, the structural and biophysical studies suggest that the proline-rich peptide segment of DtxR functions as a switch that modulates the activation of repressor activity [1].
  • The dtxR allele from C7(beta)hm723 contained a single-base change located 140 nucleotides from the 5' start of the gene, which resulted in replacement of arginine in the wild-type sequence by histidine in the mutant protein [16].
  • In contrast, the presence of sodium dodecyl sulfate was the only factor tested that conclusively affects the number of transcripts initiated in the sigB-dtxR intergenic region [17].
  • While DtxR mediates the iron-dependent repression of iron uptake, we demonstrate that yqhN (herein renamed mntR) encodes a manganese modulated regulator of manganese transport [10].
  • Hydroxyl radical footprinting experiments indicated that DtxR binds symmetrically about the dyad axis of the tox operator [18].
 

Regulatory relationships of dtxR

 

Other interactions of dtxR

  • Additionally, we provided evidence for the existence of transcripts that contain sigB, dtxR, and galE [17].
  • Strain HC3 was found to have a chain-terminating mutation in dtxR in addition to a missense mutation in its irp6B allele [11].
 

Analytical, diagnostic and therapeutic context of dtxR

  • The molecular cloning and sequence analysis of dtxR was recently described [19].
  • DNA fragments carrying dtxR were cloned into pCM2.6, and the hybrid shuttle plasmids were transformed by electroporation into wild-type C. diphtheriae C7(beta) and the regulatory mutant C7(beta)hm723, which produces toxin and siderophore constitutively under high-iron conditions [15].
  • PCR amplification and sequence analysis of the dtxR genes revealed four variants of the predicted DtxR protein among the nontoxigenic strains isolated in the United Kingdom [20].
  • A total of 26 nontoxigenic C. diphtheriae strains isolated in the United Kingdom during 1995 and 4 nontoxigenic strains isolated in other countries were analyzed by PCR and direct sequencing to determine the presence and intactness of the dtxR genes [20].
  • First, global gene expression of a dtxR deletion mutant was compared with that of the wild type using DNA microarrays [21].

References

  1. Prolylpeptide binding by the prokaryotic SH3-like domain of the diphtheria toxin repressor: a regulatory switch. Wylie, G.P., Rangachari, V., Bienkiewicz, E.A., Marin, V., Bhattacharya, N., Love, J.F., Murphy, J.R., Logan, T.M. Biochemistry (2005) [Pubmed]
  2. Molecular cloning and DNA sequence analysis of a diphtheria tox iron-dependent regulatory element (dtxR) from Corynebacterium diphtheriae. Boyd, J., Oza, M.N., Murphy, J.R. Proc. Natl. Acad. Sci. U.S.A. (1990) [Pubmed]
  3. Purification and characterization of the diphtheria toxin repressor. Schmitt, M.P., Twiddy, E.M., Holmes, R.K. Proc. Natl. Acad. Sci. U.S.A. (1992) [Pubmed]
  4. Cloning and sequence analysis of the Corynebacterium diphtheriae dtxR homologue from Streptomyces lividans and S. pilosus encoding a putative iron repressor protein. Günter-Seeboth, K., Schupp, T. Gene (1995) [Pubmed]
  5. Molecular cloning, DNA sequence analysis, and characterization of the Corynebacterium diphtheriae dtxR homolog from Brevibacterium lactofermentum. Oguiza, J.A., Tao, X., Marcos, A.T., Martín, J.F., Murphy, J.R. J. Bacteriol. (1995) [Pubmed]
  6. Structure of the metal-ion-activated diphtheria toxin repressor/tox operator complex. White, A., Ding, X., vanderSpek, J.C., Murphy, J.R., Ringe, D. Nature (1998) [Pubmed]
  7. Mechanism of metal ion activation of the diphtheria toxin repressor DtxR. D'Aquino, J.A., Tetenbaum-Novatt, J., White, A., Berkovitch, F., Ringe, D. Proc. Natl. Acad. Sci. U.S.A. (2005) [Pubmed]
  8. Genetic and biophysical studies of diphtheria toxin repressor (DtxR) and the hyperactive mutant DtxR(E175K) support a multistep model of activation. Love, J.F., vanderSpek, J.C., Marin, V., Guerrero, L., Logan, T.M., Murphy, J.R. Proc. Natl. Acad. Sci. U.S.A. (2004) [Pubmed]
  9. Metal stoichiometry and functional studies of the diphtheria toxin repressor. Spiering, M.M., Ringe, D., Murphy, J.R., Marletta, M.A. Proc. Natl. Acad. Sci. U.S.A. (2003) [Pubmed]
  10. Manganese homeostasis in Bacillus subtilis is regulated by MntR, a bifunctional regulator related to the diphtheria toxin repressor family of proteins. Que, Q., Helmann, J.D. Mol. Microbiol. (2000) [Pubmed]
  11. Identification of a DtxR-regulated operon that is essential for siderophore-dependent iron uptake in Corynebacterium diphtheriae. Qian, Y., Lee, J.H., Holmes, R.K. J. Bacteriol. (2002) [Pubmed]
  12. Sequence of ligand binding and structure change in the diphtheria toxin repressor upon activation by divalent transition metals. Rangachari, V., Marin, V., Bienkiewicz, E.A., Semavina, M., Guerrero, L., Love, J.F., Murphy, J.R., Logan, T.M. Biochemistry (2005) [Pubmed]
  13. Cysteine-102 is positioned in the metal binding activation site of the Corynebacterium diphtheriae regulatory element DtxR. Tao, X., Murphy, J.R. Proc. Natl. Acad. Sci. U.S.A. (1993) [Pubmed]
  14. Isolation and characterization of iron-independent positive dominant mutants of the diphtheria toxin repressor DtxR. Sun, L., vanderSpek, J., Murphy, J.R. Proc. Natl. Acad. Sci. U.S.A. (1998) [Pubmed]
  15. Iron-dependent regulation of diphtheria toxin and siderophore expression by the cloned Corynebacterium diphtheriae repressor gene dtxR in C. diphtheriae C7 strains. Schmitt, M.P., Holmes, R.K. Infect. Immun. (1991) [Pubmed]
  16. Characterization of a defective diphtheria toxin repressor (dtxR) allele and analysis of dtxR transcription in wild-type and mutant strains of Corynebacterium diphtheriae. Schmitt, M.P., Holmes, R.K. Infect. Immun. (1991) [Pubmed]
  17. Transcription of the contiguous sigB, dtxR, and galE genes in Corynebacterium diphtheriae: evidence for multiple transcripts and regulation by environmental factors. Oram, D.M., Jacobson, A.D., Holmes, R.K. J. Bacteriol. (2006) [Pubmed]
  18. Analysis of diphtheria toxin repressor-operator interactions and characterization of a mutant repressor with decreased binding activity for divalent metals. Schmitt, M.P., Holmes, R.K. Mol. Microbiol. (1993) [Pubmed]
  19. Specific binding of the diphtheria tox regulatory element DtxR to the tox operator requires divalent heavy metal ions and a 9-base-pair interrupted palindromic sequence. Tao, X., Boyd, J., Murphy, J.R. Proc. Natl. Acad. Sci. U.S.A. (1992) [Pubmed]
  20. Molecular characterization of diphtheria toxin repressor (dtxR) genes present in nontoxigenic Corynebacterium diphtheriae strains isolated in the United Kingdom. De Zoysa, A., Efstratiou, A., Hawkey, P.M. J. Clin. Microbiol. (2005) [Pubmed]
  21. The DtxR regulon of Corynebacterium glutamicum. Wennerhold, J., Bott, M. J. Bacteriol. (2006) [Pubmed]
 
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