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Gene Review

polA  -  DNA polymerase I

Escherichia coli O157:H7 str. EDL933

 
 
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Disease relevance of polA

  • We have applied this method to purify DNA polymerase both from wild type E. coli cells and from cells bearing a lambda prophage carrying the polA gene (Kelley, W.S., Chalmers, K., and Murray, N.E. (1977) Proc. Natl. Acad. Sci. U.S.A. 74, 5632-5636) [1].
  • Transduction with phage P1 indicates at least 70% linkage between glnA and polA [2].
  • The Streptococcus pneumoniae polA gene was altered at various positions by deletions and insertions [3].
  • Many wild type Salmonella strains are 4-5 times more sensitive than wild type E. coli and their inactivation curves is similar to that for E. coli with a mutation in the polA gene [4].
  • (3) There was a 78% correspondence between results obtained with E. coli polA and Bacillus subtilis (H17/M45, 17A/45T) rec assay and between E. coli polA and Proteus mirabilis [5].
 

High impact information on polA

  • A central Hae III fragment, Hae III-G, containing the nucleotide sequence coding for the RNA primer for the complementary strand and the nicking site for gene II protein, is sufficient for plasmid replication in M13-infected polA- cells but not for high frequency transformation [6].
  • Screening of the mutations in vivo for the classical polA-defective phenotype (sensitivity to DNA damage) demonstrated that a genetic screen of this type may be a reasonable predictor or kcat or of DNA binding affinity in future mutational studies [7].
  • Ferrate oxidation of Escherichia coli DNA polymerase-I. Identification of a methionine residue that is essential for DNA binding [8].
  • Treatment of Escherichia coli DNA polymerase-I with potassium ferrate (K2FeO4), a site-specific oxidizing agent for the phosphate group-binding sites of proteins, results in the irreversible inactivation of enzyme activity as judged by the loss of polymerization as well as 3'-5' exonuclease activity [8].
  • A further difference noted in infected polA strains was a 10-fold reduction in the frequency of Mu-mediated transposition of chromosomal genes to an F plasmid [9].
 

Chemical compound and disease context of polA

  • In Escherichia coli polA lig-4 bacteria, the moles percent 6-methyladenine content of 10S deoxyribonucleic acid (Okazaki fragments) is 0.96 compared with 1.4 for bulk desoxyribonucleic acid [10].
  • Excision of pyrimidine dimers in normal and T4-infected Escherichia coli: effect of polA and other mutations [11].
  • A mutagenic effect of allylisothiocyanate (AITC) on E. coli WP 67 (trp uvrA polA) was only found in a test with metabolic activation in vitro [12].
  • Since effects of the polA and the x or y mutations are additive, it is supposed that there are at least two pathways for the repair of methyl meth-anesulfonate-damaged T4 DNA, one controlled by the x and the y genes and the other in which E. coli DNA olymerase I is involved [13].
  • Inhibition of Escherichia coli DNA polymerase-I by the anti-cancer drug cis-diaminedichloroplatinum(II): what roles do polymerases play in cis-platin-induced cytotoxicity [14]?
 

Biological context of polA

  • These results suggest that lexA(Def) activates a RecA-independent, RecF-dependent recombination repair pathway that suppresses the defect in DNA replication in recA polA double mutants [15].
  • Recently, a relationship was found between their antitumor properties and their cytotoxic effect on the polA Escherichia coli mutant strain, suggesting that 7H-pyrido[4,3-c]carbazole dimers might induce a DNA deformation that could be recognized by the E. coli SOS repair system [16].
  • DNA was integrated into the S. typhimurium chromosome at aroC by transferring the vectors into S. typhimurium polA mutants and allowing homologous recombination to occur between the cloned and chromosomal aroC genes [17].
  • Two different DNA damage-sensitive strains generated by chemical mutagenesis were found to be defective in a gene that has extended DNA and protein sequence homology with polA of Escherichia coli [18].
  • Polypeptide chain-terminating mutations within the predicted open reading frame for the 27-kDa polypeptide abolished the synthesis of this polypeptide and also the Escherichia coli polA-independence phenotype of the pCU1 replicon [19].
 

Associations of polA with chemical compounds

  • The adaptive response of E.coli to low levels of alkylating agent: the role of polA in killing adaptation [20].
  • Several MMS-resistant revertants isolated from one of the S. sonnei polA mutants regained 3-120% of the DNA polymerase activity found in the extracts of the wild-type parent strain [21].
  • Cells pretreated with nonlethal doses of plumbagin showed enhanced survival upon exposure to high concentrations of plumbagin, but were unchanged in their susceptibility to far-UV irradiation. polA and recA mutants were not significantly more sensitive than wild type to killing by plumbagin [22].
  • The medium had no effect on the number of mutants expressed in an excision deficient uvrA- strain (WP2 uvrA trp-) or a polymerase I mutant (P3478 polA thy-) [23].
  • This was interpreted to mean that the loss of streptomycin resistant mutants on PBA involves the excision repair pathway and is dependent on the polA gene product, polymerase I [23].
 

Analytical, diagnostic and therapeutic context of polA

  • The breaks observed after treatment with metal chelators and H2O2 were repaired 60 min after H2O2 elimination in xthA but not polA mutant cells [24].

References

  1. A simple and rapid purification method for Escherichia coli DNA polymerase I. Rhodes, G., Jentsch, K.D., Jovin, T.M. J. Biol. Chem. (1979) [Pubmed]
  2. Deletion mapping of the polA-metB region of the Escherichia coli chromosome. Pahel, G., Bloom, F.R., Tyler, B. J. Bacteriol. (1979) [Pubmed]
  3. Streptococcus pneumoniae DNA polymerase I lacks 3'-to-5' exonuclease activity: localization of the 5'-to-3' exonucleolytic domain. Diaz, A., Pons, M.E., Lacks, S.A., Lopez, P. J. Bacteriol. (1992) [Pubmed]
  4. UV-sensitivity and repair of UV-damages in Salmonella of wild type. Kondratiev, Y.S., Brukhansky, G.V., Andreeva, I.V., Skavronskaya, A.G. Mol. Gen. Genet. (1977) [Pubmed]
  5. An evaluation of tests using DNA repair-deficient bacteria for predicting genotoxicity and carcinogenicity. A report of the U.S. EPA's Gene-TOX Program. Leifer, Z., Kada, T., Mandel, M., Zeiger, E., Stafford, R., Rosenkranz, H.S. Mutat. Res. (1981) [Pubmed]
  6. Replication of the plasmid pBR322 under the control of a cloned replication origin from the single-stranded DNA phage M13. Cleary, J.M., Ray, D.S. Proc. Natl. Acad. Sci. U.S.A. (1980) [Pubmed]
  7. Identification of residues critical for the polymerase activity of the Klenow fragment of DNA polymerase I from Escherichia coli. Polesky, A.H., Steitz, T.A., Grindley, N.D., Joyce, C.M. J. Biol. Chem. (1990) [Pubmed]
  8. Ferrate oxidation of Escherichia coli DNA polymerase-I. Identification of a methionine residue that is essential for DNA binding. Basu, A., Williams, K.R., Modak, M.J. J. Biol. Chem. (1987) [Pubmed]
  9. Involvement of Escherichia coli K-12 DNA polymerase I in the growth of bacteriophage Mu. McBeth, D.L., Taylor, A.L. J. Virol. (1983) [Pubmed]
  10. Adenine methylation of Okazaki fragments in Escherichia coli. Marinus, M.G. J. Bacteriol. (1976) [Pubmed]
  11. Excision of pyrimidine dimers in normal and T4-infected Escherichia coli: effect of polA and other mutations. Katsuki, M., Sekiguchi, M. Biochim. Biophys. Acta (1975) [Pubmed]
  12. Mutagenic effects of allylisothiocyanate in Escherichia coli WP 67. Ríhová, E. Folia Microbiol. (Praha) (1982) [Pubmed]
  13. Repair of DNA damaged by methyl methanesulfonate in bacteriophage T4. Nishida, Y., Yasuda, S., Sekiguchi, M. Biochim. Biophys. Acta (1976) [Pubmed]
  14. Inhibition of Escherichia coli DNA polymerase-I by the anti-cancer drug cis-diaminedichloroplatinum(II): what roles do polymerases play in cis-platin-induced cytotoxicity? Duman, R.K., Heath, R.T., Bose, R.N. FEBS Lett. (1999) [Pubmed]
  15. The mechanism of recA polA lethality: suppression by RecA-independent recombination repair activated by the lexA(Def) mutation in Escherichia coli. Cao, Y., Kogoma, T. Genetics (1995) [Pubmed]
  16. Asymmetrical bisintercalators as potential antitumor agents. Léon, P., Garbay-Jaureguiberry, C., Lambert, B., Le Pecq, J.B., Roques, B.P. J. Med. Chem. (1988) [Pubmed]
  17. Stable expression of foreign antigens from the chromosome of Salmonella typhimurium vaccine strains. Strugnell, R.A., Maskell, D., Fairweather, N., Pickard, D., Cockayne, A., Penn, C., Dougan, G. Gene (1990) [Pubmed]
  18. Identification, sequencing, and targeted mutagenesis of a DNA polymerase gene required for the extreme radioresistance of Deinococcus radiodurans. Gutman, P.D., Fuchs, P., Ouyang, L., Minton, K.W. J. Bacteriol. (1993) [Pubmed]
  19. Mutations within the replicon of the IncN plasmid pCU1 that affect its Escherichia coli polA-independence but not its autonomous replication ability. Krishnan, B.R., Fobert, P.R., Seitzer, U., Iyer, V.N. Gene (1990) [Pubmed]
  20. The adaptive response of E.coli to low levels of alkylating agent: the role of polA in killing adaptation. Jeggo, P., Defais, M., Samson, L., Schendel, P. Mol. Gen. Genet. (1978) [Pubmed]
  21. Mutants of Shigella sonnei deficient in DNA polymerase I. Hase, T., Masamune, Y. J. Biochem. (1981) [Pubmed]
  22. Toxicity and mutagenicity of plumbagin and the induction of a possible new DNA repair pathway in Escherichia coli. Farr, S.B., Natvig, D.O., Kogoma, T. J. Bacteriol. (1985) [Pubmed]
  23. Effect of phosphate buffer agar on the number of UV-induced mutations to streptomycin resistance in Escherichia coli strains. Specht, S.M., Sideropoulos, A.S. Microbios (1990) [Pubmed]
  24. Effects of metal ion chelators on DNA strand breaks and inactivation produced by hydrogen peroxide in Escherichia coli: detection of iron-independent lesions. Asad, N.R., Leitão, A.C. J. Bacteriol. (1991) [Pubmed]
 
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