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Gene Review

ECs4890  -  DNA-binding transcriptional regulator OxyR

Escherichia coli O157:H7 str. Sakai

 
 
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Disease relevance of ECs4890

  • The Escherichia coli OxyR transcription factor senses H2O2 and is activated through the formation of an intramolecular disulfide bond [1].
  • Escherichia coli OxyR modulation of bacteriophage Mu mom expression in dam+ cells can be attributed to its ability to bind hemimethylated Pmom promoter DNA [2].
  • Salmonella can enhance its resistance to oxidants through the induction of specific genetic pathways controlled by SoxRS, OxyR, sigma(S), sigma(E), SlyA, and RecA [3].
  • Lack of expression of the global regulator OxyR in Haemophilus influenzae has a profound effect on growth phenotype [4].
  • OxyR regulon mutants should be useful for identifying other determinants of INH resistance in both E. coli and Mycobacterium tuberculosis and for finding new INH-like drugs [5].
 

High impact information on ECs4890

  • Using the transcription factor OxyR as a model, we have generated, in vitro, several stable, posttranslational modifications of the single regulatory thiol (SH), including S-NO, S-OH, and S-SG, and shown that each occurs in vivo [6].
  • Here we report that certain S-nitrosothiols (RSNOs) impose what we term a "nitrosative stress" to E. coli, evidenced by lowering of intracellular thiol and the transcriptional activation of OxyR by S-nitrosylation [7].
  • The results suggest that direct oxidation of the OxyR protein brings about a conformational change by which OxyR transduces an oxidative stress signal to RNA polymerase [8].
  • Both the oxidized and the reduced forms of the OxyR protein are capable of binding to three diverse sequences upstream of OxyR-regulated promoters, but the interactions of the two forms of OxyR with the promoter regions are different [8].
  • A DeltaoxyRS mutant strain of E. coli was significantly more susceptible than the parent strain to neutrophil-mediated killing, which suggests that OxyR-regulated gene products contribute a measure of resistance to neutrophil antimicrobial systems [9].
 

Chemical compound and disease context of ECs4890

 

Biological context of ECs4890

  • Genes regulated by the oxidant sensing transcription factor OxyR were among those strongly induced upon phagocytosis by normal, but not oxidase-deficient, neutrophils [9].
  • The utility of this collection covering about 30% of the transcriptional units was tested by analyzing individual fusions representative of heat shock, SOS, OxyR, SoxRS, and cya/crp stress-responsive regulons [15].
  • One such suppressor strain, FA113, grows almost as rapidly as the wild type in the absence of reductant, exhibits slightly faster kinetics of disulfide bond formation, and has fully induced activity of the transcriptional activator, OxyR [16].
  • Methylation interference assays on two OxyR-binding sites showed that OxyR contacts its recognition sequences predominantly at positions of degenerate homology [17].
  • OxyR protein purified in its oxidized form was found to bind four of its non-homologous, functional DNA-binding sites with over 10(6)-fold higher affinity than random DNA sequences [17].
 

Associations of ECs4890 with chemical compounds

  • An important and provocative study of the modification of thiols in the transcription factor OxyR recently extended this hypothesis [18].
  • Mass spectrometric analysis of activated OxyR revealed thioesterification of the critical regulatory cysteine, Cys-199, to an avicin fragment comprising the outer monoterpene side chain [19].
  • Key regulators of the adaptive responses in this organism are the SoxRS and OxyR transcription factors, which induce the expression of antioxidant activities in response to O2*- and H2O2 stress, respectively [20].
  • The OxyR-regulated alkyl hydroperoxide reductase encoded by ahpFC did not detectably affect H2O2 or catalase activity levels [21].
  • Experiments using strains expressing mutant OxyR proteins with Cys to Ser single amino acids substitutions confirmed that the disulfide bond is formed between the Cys-199 and -208 [22].
 

Analytical, diagnostic and therapeutic context of ECs4890

  • The results of immunoblotting experiments demonstrated that the level of OxyR protein exhibits the same biphasic expression [23].
  • In this study, I demonstrated by SDS-PAGE under non-reducing conditions that an intramolecular disulfide bond is formed in OxyR upon exposure of the cells to hydrogen peroxide in vivo [22].
  • The DNA microarray measurements allowed the identification of several new OxyR-activated genes, including the hemH heme biosynthetic gene; the six-gene suf operon, which may participate in Fe-S cluster assembly or repair; and four genes of unknown function [24].
  • Using site-directed mutagenesis, we found that one cysteine residue (C-199) is critical for the redox sensitivity of OxyR, and a C-199-->S mutation appears to lock the OxyR protein in the reduced form [25].
  • Northern blot hybridization, promoter-lacZ fusion, and enzyme assay experiments revealed that its expression, unlike in Escherichia coli, is OxyR-independent and constitutive upon oxidative stress conditions [26].

References

  1. Structural basis of the redox switch in the OxyR transcription factor. Choi, H., Kim, S., Mukhopadhyay, P., Cho, S., Woo, J., Storz, G., Ryu, S. Cell (2001) [Pubmed]
  2. Escherichia coli OxyR modulation of bacteriophage Mu mom expression in dam+ cells can be attributed to its ability to bind hemimethylated Pmom promoter DNA. Hattman, S., Sun, W. Nucleic Acids Res. (1997) [Pubmed]
  3. The ferritin-like Dps protein is required for Salmonella enterica serovar Typhimurium oxidative stress resistance and virulence. Halsey, T.A., Vazquez-Torres, A., Gravdahl, D.J., Fang, F.C., Libby, S.J. Infect. Immun. (2004) [Pubmed]
  4. Lack of expression of the global regulator OxyR in Haemophilus influenzae has a profound effect on growth phenotype. Maciver, I., Hansen, E.J. Infect. Immun. (1996) [Pubmed]
  5. Susceptibilities of oxyR regulon mutants of Escherichia coli and Salmonella typhimurium to isoniazid. Rosner, J.L. Antimicrob. Agents Chemother. (1993) [Pubmed]
  6. OxyR: a molecular code for redox-related signaling. Kim, S.O., Merchant, K., Nudelman, R., Beyer, W.F., Keng, T., DeAngelo, J., Hausladen, A., Stamler, J.S. Cell (2002) [Pubmed]
  7. Nitrosative stress: activation of the transcription factor OxyR. Hausladen, A., Privalle, C.T., Keng, T., DeAngelo, J., Stamler, J.S. Cell (1996) [Pubmed]
  8. Transcriptional regulator of oxidative stress-inducible genes: direct activation by oxidation. Storz, G., Tartaglia, L.A., Ames, B.N. Science (1990) [Pubmed]
  9. mRNA expression profiles for Escherichia coli ingested by normal and phagocyte oxidase-deficient human neutrophils. Staudinger, B.J., Oberdoerster, M.A., Lewis, P.J., Rosen, H. J. Clin. Invest. (2002) [Pubmed]
  10. How to flip the (redox) switch. Georgiou, G. Cell (2002) [Pubmed]
  11. Role of OxyR as a peroxide-sensing positive regulator in Streptomyces coelicolor A3(2). Hahn, J.S., Oh, S.Y., Roe, J.H. J. Bacteriol. (2002) [Pubmed]
  12. Hypochlorous acid stress in Escherichia coli: resistance, DNA damage, and comparison with hydrogen peroxide stress. Dukan, S., Touati, D. J. Bacteriol. (1996) [Pubmed]
  13. Characterisation of the urease gene cluster in Bordetella bronchiseptica. McMillan, D.J., Mau, M., Walker, M.J. Gene (1998) [Pubmed]
  14. OxyR regulated the expression of two major catalases, KatA and KatB, along with peroxiredoxin, AhpC in Pseudomonas putida. Hishinuma, S., Yuki, M., Fujimura, M., Fukumori, F. Environ. Microbiol. (2006) [Pubmed]
  15. A genomic approach to gene fusion technology. Van Dyk, T.K., Wei, Y., Hanafey, M.K., Dolan, M., Reeve, M.J., Rafalski, J.A., Rothman-Denes, L.B., LaRossa, R.A. Proc. Natl. Acad. Sci. U.S.A. (2001) [Pubmed]
  16. Efficient folding of proteins with multiple disulfide bonds in the Escherichia coli cytoplasm. Bessette, P.H., Aslund, F., Beckwith, J., Georgiou, G. Proc. Natl. Acad. Sci. U.S.A. (1999) [Pubmed]
  17. Multidegenerate DNA recognition by the OxyR transcriptional regulator. Tartaglia, L.A., Gimeno, C.J., Storz, G., Ames, B.N. J. Biol. Chem. (1992) [Pubmed]
  18. Nanotransducers in cellular redox signaling: modification of thiols by reactive oxygen and nitrogen species. Cooper, C.E., Patel, R.P., Brookes, P.S., Darley-Usmar, V.M. Trends Biochem. Sci. (2002) [Pubmed]
  19. Avicinylation (thioesterification): a protein modification that can regulate the response to oxidative and nitrosative stress. Haridas, V., Kim, S.O., Nishimura, G., Hausladen, A., Stamler, J.S., Gutterman, J.U. Proc. Natl. Acad. Sci. U.S.A. (2005) [Pubmed]
  20. Oxidative stress. Storz, G., Imlay, J.A. Curr. Opin. Microbiol. (1999) [Pubmed]
  21. Homeostatic regulation of intracellular hydrogen peroxide concentration in aerobically growing Escherichia coli. González-Flecha, B., Demple, B. J. Bacteriol. (1997) [Pubmed]
  22. In vivo oxidation-reduction kinetics of OxyR, the transcriptional activator for an oxidative stress-inducible regulon in Escherichia coli. Tao, K. FEBS Lett. (1999) [Pubmed]
  23. Transcriptional regulation of the Escherichia coli oxyR gene as a function of cell growth. González-Flecha, B., Demple, B. J. Bacteriol. (1997) [Pubmed]
  24. DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide. Zheng, M., Wang, X., Templeton, L.J., Smulski, D.R., LaRossa, R.A., Storz, G. J. Bacteriol. (2001) [Pubmed]
  25. Mutational analysis of the redox-sensitive transcriptional regulator OxyR: regions important for oxidation and transcriptional activation. Kullik, I., Toledano, M.B., Tartaglia, L.A., Storz, G. J. Bacteriol. (1995) [Pubmed]
  26. The unique glutathione reductase from Xanthomonas campestris: gene expression and enzyme characterization. Loprasert, S., Whangsuk, W., Sallabhan, R., Mongkolsuk, S. Biochem. Biophys. Res. Commun. (2005) [Pubmed]
 
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