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Hoffmann, R. A wiki for the life sciences where authorship matters. Nature Genetics (2008)
 
Gene Review

ACTB  -  actin, beta

Sus scrofa

 
 
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Disease relevance of ACTB

 

High impact information on ACTB

  • We also found that SOD significantly lowered the levels of the myofibroblast marker alpha-sm actin, of beta-actin, and of the extracellular matrix components alpha1(I) collagen and tenascin-C [2].
  • To further study its roles in spermatogenesis, we showed AEP1 and beta-actin was associated together in complex by co-immunoprecipitation in adult germ cells and by immunofluorescence assay in isolated spermatozoon [3].
  • Western blot analysis was used to detect Na,K-ATPase catalytic subunit (alpha) and glycoprotein subunit (beta) protein as well as beta-actin which was used as a loading control [4].
  • Whereas the level of mRNA, encoding aminopeptidase N (relative to that of beta-actin), only varied moderately from the duodenum to the terminal ileum, the amount of lactase-phlorizin hydrolase mRNA exhibited a sharp maximum in the proximal jejunum [5].
  • The observed decreases in mRNAs for aromatase and gonadotropin receptors could not be attributed to a generalized degradation of cellular RNA during atresia, as evidenced by the presence of intact 18S and 28S ribosomal RNA as well as constitutive expression of beta-actin mRNA in atretic follicles [6].
 

Biological context of ACTB

  • In conclusion, c-myc, but not c-ras, oncogene expression is enhanced during the transition of thyroid follicular cells into monolayer culture. beta-Actin mRNA expression is also enhanced during the initiation of primary thyroid cell culture [7].
  • After 4 days, lungs were sampled to determine alveolarization (intercepts), beta-actin mRNA (protection assay), and apoptosis (terminal deoxynucleotidyl transferase dUTP nick-end labeling) [8].
 

Anatomical context of ACTB

  • Additionally, catenins were partly colocalized with beta-actin at the plasma membrane, indicating migration activity of these subcellular parts [9].
  • The dehydrogenase activity of the 80 kDa translation product is located in its N-terminal 32 kDa fragment, which is the major form isolated from endometrial epithelium. beta-Actin co-purifies with some of the 32 kDa enzyme, which contains actin-binding motifs and is homologous to hydratase-dehydrogenase-epimerase of Candida tropicalis [10].
  • We tested this hypothesis by determining the smooth muscle alpha- and gamma-actin and cytoplasmic beta-actin isoform composition of native thin filaments isolated from swine stomach using isoform-specific antibodies linked to colloidal gold beads with protein A (the cytoplasmic lambda-isoactin content was below the detection limit) [11].
  • With respect to actin isoforms, alpha-actin was predominant in single cells and beta-actin was major in the cultured cells [12].
 

Associations of ACTB with chemical compounds

  • The effect of multivitamins on the alveolarization index was reproduced (p < 0.05) by infusion of light-exposed riboflavin in the presence of vitamin C. The alveolarization index correlated (r(2) = 0.35; p < 0.05) with beta-actin mRNA, suggesting alveolar disruption [8].
  • LPS stimulation of cells revealed that RPS20 and EF1-alpha were least regulated by the LPS treatment in the TO cells relative to 18S rRNA, but in HKL, Beta-Actin was the most appropriate gene [13].
  • In ischemic tissues, levels of mRNA, normalized by mRNA for beta-actin, were increased over control values for GAPDH (range 2.7- to 4.6-fold), pyruvate kinase (2.9-fold), and pyruvate dehydrogenase (2.1-fold) [14].
 

Analytical, diagnostic and therapeutic context of ACTB

  • After 8 h of aerosol interval therapy, mRNA expression of interleukin-1 beta and TGF-beta1 in lung tissue was quantified normalized to beta-actin and hypoxanthine-guanine-phosphoribosyl-transferase by real-time polymerase chain reaction (PCR) [15].
  • Each of the 6 extraction methods yielded sufficient RNA for positive results in a real-time reverse transcription-PCR (RT-PCR) for CSFV, and all RNA, except the one extracted from blood by TRIzol LS reagent, yielded positive results in both a conventional RT-PCR for CSFV and a conventional RT-PCR for an endogenous gene encoding beta-actin [16].

References

  1. Temporal modulation of TGF-beta 1 and beta-actin gene expression in pig skin and muscular fibrosis after ionizing radiation. Martin, M., Lefaix, J.L., Pinton, P., Crechet, F., Daburon, F. Radiat. Res. (1993) [Pubmed]
  2. Antifibrotic action of Cu/Zn SOD is mediated by TGF-beta1 repression and phenotypic reversion of myofibroblasts. Vozenin-Brotons, M.C., Sivan, V., Gault, N., Renard, C., Geffrotin, C., Delanian, S., Lefaix, J.L., Martin, M. Free Radic. Biol. Med. (2001) [Pubmed]
  3. Acrosome-specific gene AEP1: Identification, characterization and roles in spermatogenesis. Luk, J.M., Lee, N.P., Shum, C.K., Lam, B.Y., Siu, A.F., Che, C.M., Tam, P.C., Cheung, A.N., Yang, Z.M., Lin, Y.N., Matzuk, M.M., Lee, K.F., Yeung, W.S. J. Cell. Physiol. (2006) [Pubmed]
  4. Regional distribution of Na,K-ATPase activity in porcine lens epithelium. Tamiya, S., Dean, W.L., Paterson, C.A., Delamere, N.A. Invest. Ophthalmol. Vis. Sci. (2003) [Pubmed]
  5. Lactase-phlorizin hydrolase and aminopeptidase N are differentially regulated in the small intestine of the pig. Torp, N., Rossi, M., Troelsen, J.T., Olsen, J., Danielsen, E.M. Biochem. J. (1993) [Pubmed]
  6. Apoptosis in atretic ovarian follicles is associated with selective decreases in messenger ribonucleic acid transcripts for gonadotropin receptors and cytochrome P450 aromatase. Tilly, J.L., Kowalski, K.I., Schomberg, D.W., Hsueh, A.J. Endocrinology (1992) [Pubmed]
  7. Initiation of normal thyroid cells in primary culture associated with enhanced c-myc messenger ribonucleic acid levels. Hirayu, H., Dere, W.H., Rapoport, B. Endocrinology (1987) [Pubmed]
  8. Interaction between ascorbate and light-exposed riboflavin induces lung remodeling. Lavoie, J.C., Rouleau, T., Chessex, P. J. Pharmacol. Exp. Ther. (2004) [Pubmed]
  9. Endothelial barrier function under laminar fluid shear stress. Seebach, J., Dieterich, P., Luo, F., Schillers, H., Vestweber, D., Oberleithner, H., Galla, H.J., Schnittler, H.J. Lab. Invest. (2000) [Pubmed]
  10. The sequence of porcine 80 kDa 17 beta-estradiol dehydrogenase reveals similarities to the short chain alcohol dehydrogenase family, to actin binding motifs and to sterol carrier protein 2. Leenders, F., Husen, B., Thole, H.H., Adamski, J. Mol. Cell. Endocrinol. (1994) [Pubmed]
  11. Actin isoform expression, cellular heterogeneity, and contractile function in smooth muscle. Drew, J.S., Murphy, R.A. Can. J. Physiol. Pharmacol. (1997) [Pubmed]
  12. Contractile protein isoforms of single and cultured smooth muscle cells from guinea pig ileum. Iijima, M., Aoki, K., Aizawa, H., Ohata, H., Momose, K. Journal of smooth muscle research = Nihon Heikatsukin Gakkai kikanshi. (1998) [Pubmed]
  13. Expression profiling and validation of reference gene candidates in immune relevant tissues and cells from Atlantic salmon (Salmo salar L.). Ingerslev, H.C., Pettersen, E.F., Jakobsen, R.A., Petersen, C.B., Wergeland, H.I. Mol. Immunol. (2006) [Pubmed]
  14. Alteration of gene expression for glycolytic enzymes in aerobic and ischemic myocardium. Liedtke, A.J., Lynch, M.L. Am. J. Physiol. (1999) [Pubmed]
  15. Aerosolized adrenomedullin suppresses pulmonary transforming growth factor-beta1 and interleukin-1 beta gene expression in vivo. von der Hardt, K., Kandler, M.A., Popp, K., Schoof, E., Chada, M., Rascher, W., Dötsch, J. Eur. J. Pharmacol. (2002) [Pubmed]
  16. Comparison of six RNA extraction methods for the detection of classical swine fever virus by real-time and conventional reverse transcription-PCR. Deng, M.Y., Wang, H., Ward, G.B., Beckham, T.R., McKenna, T.S. J. Vet. Diagn. Invest. (2005) [Pubmed]
 
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