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Hoffmann, R. A wiki for the life sciences where authorship matters. Nature Genetics (2008)
 
Gene Review

IGKV2-23  -  immunoglobulin kappa variable 2-23...

Homo sapiens

Synonyms: A24, IGKV223
 
 
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Disease relevance of IGKV2-23

  • Importantly, neither of the vaccinating pancreatic cancer cell lines expressed HLA-A2, A3, or A24 [1].
  • For three other donors tested, the potential restricting alleles for recognition of NS3 were B38, A24, and/or B62 and B35.These results indicate that the CD8+CTL responses of humans after immunization with one serotype of dengue virus are diverse and directed against a variety of proteins [2].
  • Coxsackievirus A24 and acute haemorrhagic conjunctivitis in Sri Lanka [3].
  • More than 6,000 peptides from 258 putative vaccinia ORFs predicted to bind the common molecules of the HLA A1, A2, A3, A24, B7, and B44 supertypes were screened with peripheral blood mononuclear cells of 31 vaccinees [4].
  • Viral sequence and host immune response were investigated in an unusual, asymptomatic chronic hepatitis B virus carrier (human leukocyte antigen type A24, Bw61, Bw62, Bw6, DRw11, DRw52, DQw7) who was consistently nonreactive for antibody to HBc and had a normal ALT level over a 5-yr study period [5].
 

Psychiatry related information on IGKV2-23

 

High impact information on IGKV2-23

  • We report here the consistent induction of CD8(+) T cell responses to multiple HLA-A2, A3, and A24-restricted mesothelin epitopes exclusively in the three patients with vaccine-induced DTH responses [1].
  • The HLA haplotype A24, B18, DRW 4 X 7 was found in several family members, but the association of the disease with the HLA system remains to be established [7].
  • Thus, one can now quantitatively separate the A24-lacking core mononucleosomes from those containing A24, making it possible to directly address the question of whether A24 is associated with nucleosomes containing a specific subset of DNA sequences [8].
  • Disappearance of a structural chromatin protein A24 in mitosis: implications for molecular basis of chromatin condensation [9].
  • A chromatin protein, A24, a conjugate of histone H2A and evolutionally conserved ubiquitin, was virtually the only structural polypeptide that was present in interphase but missing in mitosis of a Chinese hamster cell line (DON) [9].
 

Chemical compound and disease context of IGKV2-23

 

Biological context of IGKV2-23

  • Most important, we showed that A24 blocked the ex vivo proliferation of malignant T cells from both acute and chronic forms of ATL, through induction of programmed cell death [13].
  • Evidence for this A24 supertype is limited to HLA sequence homology and/or similarity in peptide binding motifs for the alleles [14].
  • Our results demonstrate that the 2'-hydroxyl groups at A10, G11, A24, and C25 provide essential functions for catalysis, possibly forming important tertiary contacts or magnesium coordination sites that are necessary for active site architecture [15].
  • Since H1o and protein A24 are considered to be involved in the inhibition of DNA replication and RNA synthesis, respectively, H1o-like protein and protein A24 in the frog erythrocyte lacking H5 may have central roles in genetic inactivation during erythrocyte maturation [16].
  • None of 12 A24-negative Japanese hemophiliacs but 9 out of 16 patients infected through unprotected sexual intercourse had Nef138-10(2F) (P < 0.01) [17].
 

Anatomical context of IGKV2-23

  • Occurrence of H1o-like protein and protein A24 in the chromatin of bullfrog erythrocytes lacking histone 5 [16].
  • Mutation of human immunodeficiency virus type 1 at amino acid 585 on gp41 results in loss of killing by CD8+ A24-restricted cytotoxic T lymphocytes [18].
  • Autologous dendritic cells (DCs) were generated ex vivo and were pulsed with MAGE-3 peptide, depending on the patient's HLA haplotype (HLA-A2 or A24) [19].
  • A flow-cytometric technique was developed to measure the frequency of variant lymphocytes lacking expression of HLA-A2 or A24 allele products among donors heterozygous for HLA-A2 or A24 [20].
  • Seven CD4+ CTL clones were isolated from a healthy donor (HLA A2 A24; B8 B27; DRw17 DRw52a) by repeated stimulation with irradiated autologous EBV-transformed B cell lines (EBV-B) [21].
 

Associations of IGKV2-23 with chemical compounds

  • The structure is isomorphous to native FdI except at the site of mutation where A24 moves toward the [4Fe-4S] cluster [22].
  • Eight supertypes were defined: A2, A3, A24, B7, B27, B44, C1, and C4 [23].
  • In the patients exposed to metamizol, an A24-B7 haplotype was found with a frequency higher than that in the non-exposed patients and the reference group (p < 0.05) [24].
  • The two loops interact via a ribose zipper motif involving the 2'-hydroxyls of A10, G11, A24, and C25 [Rupert, P. B., and Ferre d'Amare, A. R. (2001) Nature 401, 780-786] [25].
  • The same nitrosoureas and, in addition, 2-chloroethyl isocyanate inhibited an A24 lyase-containing cytoplasmic extract in cleaving protein A24 into histone H2A and ubiquitin [11].
 

Analytical, diagnostic and therapeutic context of IGKV2-23

  • These data substantiate the biological relevance of the A24 supertype, and the identification of viral epitopes with the capacity to bind promiscuously across this supertype could aid efforts to develop CTL-based vaccines or immunotherapy [14].
  • Deletion of the 2'-hydroxyl group at each of four sites (A10, G11, A24, and C25) was found to result in severe inhibition of cleavage activity (kcat/KM decreased by 100- to 1000-fold), although KM measurements and mobility-shift assays showed that substrate binding was not affected [15].
  • After a single vaccination, HPV-specific CTLs were found in four patients (HLA A1, A3, three patients; HLA A1, A24, one patient) [26].
  • We previously reported that Tax-specific CD8(+) cytotoxic T lymphocytes (CTLs), directed to single epitopes restricted by HLA-A2 or A24, expanded in vitro and in vivo in peripheral blood mononuclear cells (PBMC) from some adult T-cell leukemia (ATL) patients after but not before allogeneic hematopoietic stem cell transplantation (HSCT) [27].
  • At the level of the HLA supertypes, a lower viral load was associated with higher T-cell responses to Gag p24 within the HLA A2, A24, B27, and B58 supertypes, in contrast to the absence of such a correlation within the HLA B44 supertype [28].

References

  1. Mesothelin-specific CD8(+) T cell responses provide evidence of in vivo cross-priming by antigen-presenting cells in vaccinated pancreatic cancer patients. Thomas, A.M., Santarsiero, L.M., Lutz, E.R., Armstrong, T.D., Chen, Y.C., Huang, L.Q., Laheru, D.A., Goggins, M., Hruban, R.H., Jaffee, E.M. J. Exp. Med. (2004) [Pubmed]
  2. Dominant recognition by human CD8+ cytotoxic T lymphocytes of dengue virus nonstructural proteins NS3 and NS1.2a. Mathew, A., Kurane, I., Rothman, A.L., Zeng, L.L., Brinton, M.A., Ennis, F.A. J. Clin. Invest. (1996) [Pubmed]
  3. Coxsackievirus A24 and acute haemorrhagic conjunctivitis in Sri Lanka. Higgins, P.G., Chapman, T.E. Lancet (1977) [Pubmed]
  4. HLA class I-restricted responses to vaccinia recognize a broad array of proteins mainly involved in virulence and viral gene regulation. Oseroff, C., Kos, F., Bui, H.H., Peters, B., Pasquetto, V., Glenn, J., Palmore, T., Sidney, J., Tscharke, D.C., Bennink, J.R., Southwood, S., Grey, H.M., Yewdell, J.W., Sette, A. Proc. Natl. Acad. Sci. U.S.A. (2005) [Pubmed]
  5. Chronic hepatitis B virus infection in an anti-HBc-nonreactive blood donor: variant virus or defective immune response? Lee, J.H., Paglieroni, T.G., Holland, P.V., Zeldis, J.B. Hepatology (1992) [Pubmed]
  6. Reversible paraneoplastic encephalomyelitis associated with a benign ovarian teratoma. Taylor, R.B., Mason, W., Kong, K., Wennberg, R. The Canadian journal of neurological sciences. Le journal canadien des sciences neurologiques. (1999) [Pubmed]
  7. Idiopathic familial cirrhosis and steatosis in adults. Altman, A.R., Gottfried, E.B., Paronetto, F., Lieber, C.S. Gastroenterology (1979) [Pubmed]
  8. High-resolution fractionation of nucleosomes: minor particles, "whiskers," and separation of mononucleosomes containing and lacking A24 semihistone. Levinger, L., Varshavsky, A. Proc. Natl. Acad. Sci. U.S.A. (1980) [Pubmed]
  9. Disappearance of a structural chromatin protein A24 in mitosis: implications for molecular basis of chromatin condensation. Matsui, S.I., Seon, B.K., Sandberg, A.A. Proc. Natl. Acad. Sci. U.S.A. (1979) [Pubmed]
  10. Increases in protein A24 following treatment of Ehrlich ascites tumor cells with 1-methyl-1-nitrosourea and 1,3-bis(2-chloroethyl)-1-nitrosourea. Dornish, J.M., Smith-Kielland, I. FEBS Lett. (1981) [Pubmed]
  11. Inhibition of protein A24 lyase by nitrosoureas. Markussen, G., Smith-Kielland, I., Dornish, J.M. FEBS Lett. (1984) [Pubmed]
  12. Inhibition of the enteroviruses that cause acute hemorrhagic conjunctivitis (AHC) by benzimidazoles; enviroxime (LY 122772) and enviradone (LY 127123). Langford, M.P., Ball, W.A., Ganley, J.P. Antiviral Res. (1995) [Pubmed]
  13. A neutralizing monoclonal antibody (mAb A24) directed against the transferrin receptor induces apoptosis of tumor T lymphocytes from ATL patients. Moura, I.C., Lepelletier, Y., Arnulf, B., England, P., Baude, C., Beaumont, C., Bazarbachi, A., Benhamou, M., Monteiro, R.C., Hermine, O. Blood (2004) [Pubmed]
  14. Promiscuous CTL recognition of viral epitopes on multiple human leukocyte antigens: biological validation of the proposed HLA A24 supertype. Burrows, S.R., Elkington, R.A., Miles, J.J., Green, K.J., Walker, S., Haryana, S.M., Moss, D.J., Dunckley, H., Burrows, J.M., Khanna, R. J. Immunol. (2003) [Pubmed]
  15. Four ribose 2'-hydroxyl groups essential for catalytic function of the hairpin ribozyme. Chowrira, B.M., Berzal-Herranz, A., Keller, C.F., Burke, J.M. J. Biol. Chem. (1993) [Pubmed]
  16. Occurrence of H1o-like protein and protein A24 in the chromatin of bullfrog erythrocytes lacking histone 5. Shimada, T., Okihama, Y., Murata, C., Shukuya, R. J. Biol. Chem. (1981) [Pubmed]
  17. Frequent transmission of cytotoxic-T-lymphocyte escape mutants of human immunodeficiency virus type 1 in the highly HLA-A24-positive Japanese population. Furutsuki, T., Hosoya, N., Kawana-Tachikawa, A., Tomizawa, M., Odawara, T., Goto, M., Kitamura, Y., Nakamura, T., Kelleher, A.D., Cooper, D.A., Iwamoto, A. J. Virol. (2004) [Pubmed]
  18. Mutation of human immunodeficiency virus type 1 at amino acid 585 on gp41 results in loss of killing by CD8+ A24-restricted cytotoxic T lymphocytes. Dai, L.C., West, K., Littaua, R., Takahashi, K., Ennis, F.A. J. Virol. (1992) [Pubmed]
  19. Dendritic cell vaccination with MAGE peptide is a novel therapeutic approach for gastrointestinal carcinomas. Sadanaga, N., Nagashima, H., Mashino, K., Tahara, K., Yamaguchi, H., Ohta, M., Fujie, T., Tanaka, F., Inoue, H., Takesako, K., Akiyoshi, T., Mori, M. Clin. Cancer Res. (2001) [Pubmed]
  20. Development of a flow-cytometric HLA-A locus mutation assay for human peripheral blood lymphocytes. Kushiro, J., Hirai, Y., Kusunoki, Y., Kyoizumi, S., Kodama, Y., Wakisaka, A., Jeffreys, A., Cologne, J.B., Dohi, K., Nakamura, N. Mutat. Res. (1992) [Pubmed]
  21. CD4+ cytolytic T cell clones restricted to HLA class II, DR beta I, and DR beta III chains. Noguchi, M., Hozumi, N., Nisbet-Brown, E. Cell. Immunol. (1989) [Pubmed]
  22. Crystallographic analysis of two site-directed mutants of Azotobacter vinelandii ferredoxin. Soman, J., Iismaa, S., Stout, C.D. J. Biol. Chem. (1991) [Pubmed]
  23. Identifiying human MHC supertypes using bioinformatic methods. Doytchinova, I.A., Guan, P., Flower, D.R. J. Immunol. (2004) [Pubmed]
  24. Genetic factors and risk of agranulocytosis from metamizol. Vlahov, V., Bacracheva, N., Tontcheva, D., Naumova, E., Mavrudieva, M., Ilieva, P., Michailova, A. Pharmacogenetics (1996) [Pubmed]
  25. Tertiary structure stability of the hairpin ribozyme in its natural and minimal forms: different energetic contributions from a ribose zipper motif. Klostermeier, D., Millar, D.P. Biochemistry (2001) [Pubmed]
  26. Safety and immunogenicity of TA-HPV, a recombinant vaccinia virus expressing modified human papillomavirus (HPV)-16 and HPV-18 E6 and E7 genes, in women with progressive cervical cancer. Kaufmann, A.M., Stern, P.L., Rankin, E.M., Sommer, H., Nuessler, V., Schneider, A., Adams, M., Onon, T.S., Bauknecht, T., Wagner, U., Kroon, K., Hickling, J., Boswell, C.M., Stacey, S.N., Kitchener, H.C., Gillard, J., Wanders, J., Roberts, J.S., Zwierzina, H. Clin. Cancer Res. (2002) [Pubmed]
  27. Identification of two new HLA-A*1101-restricted tax epitopes recognized by cytotoxic T lymphocytes in an adult T-cell leukemia patient after hematopoietic stem cell transplantation. Harashima, N., Tanosaki, R., Shimizu, Y., Kurihara, K., Masuda, T., Okamura, J., Kannagi, M. J. Virol. (2005) [Pubmed]
  28. Association between virus-specific T-cell responses and plasma viral load in human immunodeficiency virus type 1 subtype C infection. Novitsky, V., Gilbert, P., Peter, T., McLane, M.F., Gaolekwe, S., Rybak, N., Thior, I., Ndung'u, T., Marlink, R., Lee, T.H., Essex, M. J. Virol. (2003) [Pubmed]
 
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