The world's first wiki where authorship really matters (Nature Genetics, 2008). Due credit and reputation for authors. Imagine a global collaborative knowledge base for original thoughts. Search thousands of articles and collaborate with scientists around the globe.

wikigene or wiki gene protein drug chemical gene disease author authorship tracking collaborative publishing evolutionary knowledge reputation system wiki2.0 global collaboration genes proteins drugs chemicals diseases compound
Hoffmann, R. A wiki for the life sciences where authorship matters. Nature Genetics (2008)
 
Gene Review

ECs1739  -  global DNA-binding transcriptional dual...

Escherichia coli O157:H7 str. Sakai

 
 
Welcome! If you are familiar with the subject of this article, you can contribute to this open access knowledge base by deleting incorrect information, restructuring or completely rewriting any text. Read more.
 

Disease relevance of ECs1739

  • Evasion of protective immunity by Borrelia burgdorferi by truncation of outer surface protein B [1].
  • Thus, the DinR protein is structurally and functionally analogous to the E. coli LexA protein, and accordingly, we propose renaming the protein B. subtilis LexA [2].
  • Structure-function relationships in the transposition protein B of bacteriophage Mu [3].
  • Antibodies raised against the cloned CAMP cohemolysin cross-reacted with Streptococcus agalactiae protein B. We designate the 27,000-dalton molecule CAMP factor protein and name its corresponding gene cfp [4].
  • Use of an isogenic mutant constructed in Moraxella catarrhalis To identify a protective epitope of outer membrane protein B1 defined by monoclonal antibody 11C6 [5].
 

High impact information on ECs1739

 

Chemical compound and disease context of ECs1739

 

Biological context of ECs1739

  • Protein B1 contained binding sites for dATP, an allosteric effector of the reductase [9].
  • Protein H1: a role for chromatin structure in the regulation of bacterial gene expression and virulence [14]?
  • One of the known targets of histone-like protein H1 is flhDC, the master operon which is absolutely required for flagellar expression [15].
  • The reasons for the high stereospecificity of the reaction and the possible structure of the allosteric site of protein B1 are discussed [16].
  • This suggests a direct interaction between the two paralogues and the existence of distinct regulons of H-NS and an H-NS/StpA heteromeric complex. hns mutation resulted in increased expression of alpha-hemolysin, fimbriae, and iron uptake systems as well as genes involved in stress adaptation [17].
 

Anatomical context of ECs1739

  • The nucleotide sequence of the rfb gene encoding protein B has been determined, confirming it to be a 697-amino acid protein of 78.9 kDa predicted to be located in the cytoplasmic membrane [18].
  • At a high infection dose, hns mutants trigger more sudden lethality due to their increased acute toxicity in murine urinary tract infection and sepsis models [17].
  • 3. Cross-linking of cell wall preparations, consisting of the outer membrane and peptidoglycan, showed that protein B and the free form of the lipoprotein, protein F, could be linked to the peptidoglycan [19].
 

Associations of ECs1739 with chemical compounds

  • As an attempt to overcome this problem, I present a kinetic analysis of the folding of a membrane protein, disulfide bond reducing protein B (DsbB), in a mixed micelle system consisting of varying molar ratios of sodium dodecyl sulfate (SDS) and dodecyl maltoside (DM) [20].
  • Binding of protein B1 to dTTP or dATP covalently coupled to Sepharose and elution with concentration gradients of the different nucleoside triphosphate effectors gave information about (1) the arrangement of the effector binding sites on protein B1 and (2) the affinity of the effectors for these sites [21].
  • Lipopolysaccharide-free protein H1 was purified in high yield by preparative sodium dodecyl sulfate-polyacrylamide gel electrophoresis and was subjected to N-terminal amino sequencing [10].
 

Analytical, diagnostic and therapeutic context of ECs1739

  • Surfactant protein mRNA and protein pool sizes were affected differently according to the timing of endotoxin treatment, but a large increase in the amount of mature surfactant protein B in alveolar lavage samples was observed in all endotoxin groups [22].
  • Affinity chromatography on anti-B1 monoclonal gels for purification and characterization of protein B1 from Escherichia coli ribonucleotide reductase [23].
  • Cross-linking of dTTP to protein B1 by direct photoaffinity labeling, as well as the isolation and sequence determination of the labeled tryptic peptide, has recently been reported [Eriksson, S., Sjöberg, B.-M., Jörnwall, H., & Carlquist, M. (1986) J. Biol. Chem. 261, 1878-1882] [16].
  • The introduction of frameshift mutations within the region encoding protein B resulted in the synthesis of an antigenically altered LPS which is shorter than the wild-type LPS, as assessed by reaction to antisera in colony and Western immunoblots, and by silver staining of LPS separated on sodium dodecyl sulfate-polyacrylamide-gel electrophoresis [18].
  • Infected bacteria synthesize the replication protein B (MR 33000) of Mu, which was found by cell fractionation experiments to be associated with the inner cell membrane [24].

References

  1. Evasion of protective immunity by Borrelia burgdorferi by truncation of outer surface protein B. Fikrig, E., Tao, H., Kantor, F.S., Barthold, S.W., Flavell, R.A. Proc. Natl. Acad. Sci. U.S.A. (1993) [Pubmed]
  2. The bacillus subtilis dinR gene codes for the analogue of Escherichia coli LexA. Purification and characterization of the DinR protein. Miller, M.C., Resnick, J.B., Smith, B.T., Lovett, C.M. J. Biol. Chem. (1996) [Pubmed]
  3. Structure-function relationships in the transposition protein B of bacteriophage Mu. Teplow, D.B., Nakayama, C., Leung, P.C., Harshey, R.M. J. Biol. Chem. (1988) [Pubmed]
  4. Cloning and expression of a cohemolysin, the CAMP factor of Actinobacillus pleuropneumoniae. Frey, J., Perrin, J., Nicolet, J. Infect. Immun. (1989) [Pubmed]
  5. Use of an isogenic mutant constructed in Moraxella catarrhalis To identify a protective epitope of outer membrane protein B1 defined by monoclonal antibody 11C6. Luke, N.R., Russo, T.A., Luther, N., Campagnari, A.A. Infect. Immun. (1999) [Pubmed]
  6. Histone-like protein H1 (H-NS), DNA supercoiling, and gene expression in bacteria. Hulton, C.S., Seirafi, A., Hinton, J.C., Sidebotham, J.M., Waddell, L., Pavitt, G.D., Owen-Hughes, T., Spassky, A., Buc, H., Higgins, C.F. Cell (1990) [Pubmed]
  7. Identification of the ubiquinone-binding domain in the disulfide catalyst disulfide bond protein B. Xie, T., Yu, L., Bader, M.W., Bardwell, J.C., Yu, C.A. J. Biol. Chem. (2002) [Pubmed]
  8. A photoaffinity-labeled allosteric site in Escherichia coli ribonucleotide reductase. Eriksson, S., Sjöberg, B.M., Jörnvall, H., Carlquist, M. J. Biol. Chem. (1986) [Pubmed]
  9. Ribonucleoside diphosphate reductase induced by bacteriophage T4. III. Isolation and characterization of proteins B1 and B2. Berglund, O. J. Biol. Chem. (1975) [Pubmed]
  10. Outer membrane protein H1 of Pseudomonas aeruginosa: purification of the protein and cloning and nucleotide sequence of the gene. Bell, A., Hancock, R.E. J. Bacteriol. (1989) [Pubmed]
  11. Inactivation of the regulatory protein B of soluble methane monooxygenase from Methylococcus capsulatus (Bath) by proteolysis can be overcome by a Gly to Gln modification. Lloyd, J.S., Bhambra, A., Murrell, J.C., Dalton, H. Eur. J. Biochem. (1997) [Pubmed]
  12. In vitro processing of the proproteins GrdE of protein B of glycine reductase and PrdA of D-proline reductase from Clostridium sticklandii: formation of a pyruvoyl group from a cysteine residue. Bednarski, B., Andreesen, J.R., Pich, A. Eur. J. Biochem. (2001) [Pubmed]
  13. Functional expression in Escherichia coli of proteins B and C from soluble methane monooxygenase of Methylococcus capsulatus (Bath). West, C.A., Salmond, G.P., Dalton, H., Murrell, J.C. J. Gen. Microbiol. (1992) [Pubmed]
  14. Protein H1: a role for chromatin structure in the regulation of bacterial gene expression and virulence? Higgins, C.F., Hinton, J.C., Hulton, C.S., Owen-Hughes, T., Pavitt, G.D., Seirafi, A. Mol. Microbiol. (1990) [Pubmed]
  15. Salmonella flagellin induces tumor necrosis factor alpha in a human promonocytic cell line. Ciacci-Woolwine, F., Blomfield, I.C., Richardson, S.H., Mizel, S.B. Infect. Immun. (1998) [Pubmed]
  16. Direct photoaffinity labeling of ribonucleotide reductase from Escherichia coli using dTTP: characterization of the photoproducts. Kierdaszuk, B., Eriksson, S. Biochemistry (1988) [Pubmed]
  17. Role of histone-like proteins H-NS and StpA in expression of virulence determinants of uropathogenic Escherichia coli. Müller, C.M., Dobrindt, U., Nagy, G., Emödy, L., Uhlin, B.E., Hacker, J. J. Bacteriol. (2006) [Pubmed]
  18. Inactivation of the Escherichia coli B41 (O101:K99/F41) rfb gene encoding an 80-kDa polypeptide results in the synthesis of an antigenically altered lipopolysaccharide in E. coli K-12. Cheah, K.C., Manning, P.A. Gene (1993) [Pubmed]
  19. Cross-linking of the proteins in the outer membrane of Escherichia coli. Reithmeier, R.A., Bragg, P.D. Biochim. Biophys. Acta (1977) [Pubmed]
  20. Folding of DsbB in mixed micelles: a kinetic analysis of the stability of a bacterial membrane protein. Otzen, D.E. J. Mol. Biol. (2003) [Pubmed]
  21. Ribonucleotide reductase from Escherichia coli. Identification of allosteric effector sites by chromatography on immobilized effectors. von Döbeln, U. Biochemistry (1977) [Pubmed]
  22. Early gestational intra-amniotic endotoxin: lung function, surfactant, and morphometry. Moss, T.J., Newnham, J.P., Willett, K.E., Kramer, B.W., Jobe, A.H., Ikegami, M. Am. J. Respir. Crit. Care Med. (2002) [Pubmed]
  23. Affinity chromatography on anti-B1 monoclonal gels for purification and characterization of protein B1 from Escherichia coli ribonucleotide reductase. Anderson, A., Höglund, L., Pontis, E., Reichard, P. Biochemistry (1986) [Pubmed]
  24. Inhibition of bacterial segregation by early functions of phage mu and association of replication protein B with the inner cell membrane. Boeckh, C., Bade, E.G., Delius, H., Reeve, J.N. Mol. Gen. Genet. (1986) [Pubmed]
 
WikiGenes - Universities