The world's first wiki where authorship really matters (Nature Genetics, 2008). Due credit and reputation for authors. Imagine a global collaborative knowledge base for original thoughts. Search thousands of articles and collaborate with scientists around the globe.

wikigene or wiki gene protein drug chemical gene disease author authorship tracking collaborative publishing evolutionary knowledge reputation system wiki2.0 global collaboration genes proteins drugs chemicals diseases compound
Hoffmann, R. A wiki for the life sciences where authorship matters. Nature Genetics (2008)
 

Links

 

Gene Review

HIST2H3C  -  histone cluster 2, H3c

Homo sapiens

Synonyms: H3, H3.2, H3/M, H3/m, H3F2, ...
 
 
Welcome! If you are familiar with the subject of this article, you can contribute to this open access knowledge base by deleting incorrect information, restructuring or completely rewriting any text. Read more.
 

Disease relevance of HIST2H3C

 

High impact information on HIST2H3C

  • We have determined the nucleotide sequence of a continuous 2100 bp segment of DNA including both H3 and H4 coding sequences, the entire spacer DNA separating the genes and surrounding nonhistone DNA [5].
  • We have cloned and characterized members of a small multigene family that encodes late-stage histone H3 and H4 mRNAs from the sea urchin Lytechinus pictus [5].
  • Unlike their highly repetitive histone gene counterparts, which are expressed at an earlier developmental stage, late H3 and H4 histone genes are not present in tandem repeats [5].
  • From deletion analysis of a hamster H3.2 fusion gene, we report here that the crucial control signals for both cell-cycle regulation and high level expression in vivo are contained in a 32-nucleotide (nt) region about 150 nt upstream of the TATA sequence and do not require any histone protein coding sequence [6].
  • A hybrid gene containing the 5' sequence of a hamster histone H3 gene and the coding sequence of the bacterial neomycin-resistance gene (neo) was constructed [7].
 

Chemical compound and disease context of HIST2H3C

 

Biological context of HIST2H3C

 

Anatomical context of HIST2H3C

  • Expression of the pST519 H3 histone gene in COS cells in the absence of the SV40 72-bp enhancer confirmed that the sequences required for promoting transcription reside within the 750-bp 5' flanking sequences and that the exogenous enhancer facilitates, but is not a prerequisite for, transcription [14].
  • Using a nuclease S1 assay, we detected about 10,000 transcripts encoding both late H3 and H4 proteins in the unfertilized egg [15].
  • In order to test some aspects of the model we have created a series of linker scan, deletion and insertion mutants of the 3' terminus of a sea urchin H3 histone gene and have injected mutant DNAs or in vitro synthesized precursors into frog oocyte nuclei for interpretation [16].
  • Changes in the stability of a human H3 histone mRNA during the HeLa cell cycle [17].
  • Use of intracellular H3 messenger RNA as a marker to determine the proliferation pattern of normal and 7,12-dimethylbenz[a]anthracene-transformed hamster oral epithelium [18].
 

Associations of HIST2H3C with chemical compounds

  • In chromatin immunoprecipitation assays, estradiol treatment resulted in the association of the estrogen receptor-alpha (ERalpha) and acetylated H3 with the TFF1 promoter [1].
  • Models of 12 (R) HETE, 12 (S) HETE (the "S" isomer of 12 (R) HETE), and 8 (R) hydroxy-hexadecatrienoic acid [8 (R) HHDTrE, a catabolic isomer of 12 (R) HETE] were formed and docked with phosphatidyl choline and the H3-H4 peptide of the alpha-subunit of Na,K-ATPase [19].
  • Structural basis for the specific recognition of methylated histone H3 lysine 4 by the WD-40 protein WDR5 [20].
  • Here, we demonstrate via transcriptional activation studies in cell culture that alteration of residues involved in H3-H5 interaction consistently produces a gain of function in steroid hormone receptors [21].
  • Labeling of histone H3 mRNA using in situ hybridization (ISH) was assessed as a measure of S-phase cells and compared with that found using in vivo 5-bromodeoxyuridine (BrdUrd) labeling in formalin-fixed rat colonic crypts under baseline, modified 72-h starvation, and 24-h refeeding conditions [22].
 

Other interactions of HIST2H3C

  • Fusion genes were constructed using the 5' flanking sequences of this human H3 histone gene and either human beta-globin or bacterial chloramphenicol acetyltransferase (CAT) coding sequences [14].
  • The Volvox H3 gene structure combines the exon-intron organization of fungal H3 and vertebrate H3.3 genes with a termination signal typical for animal H3.1 genes [23].
  • The protein-DNA contacts persist throughout the cell cycle and thus may have a functional relationship with the basal level of transcription of this H3 gene that occurs during and outside of S phase [2].
 

Analytical, diagnostic and therapeutic context of HIST2H3C

  • The most recent innovation in tissue identification of proliferating cells is the use of in situ hybridization for the localization of histone H3 and/or H4 mRNA [24].
  • Characterization of these interactions by various procedures (including affinity chromatography on Pro T alpha-Sepharose columns, immunoblotting assay and investigation of the behaviour of mixtures of Pro T alpha and histones in solution) indicated that Pro T alpha has higher affinity for core histones (particularly H3 and H4) than for H1 [25].
  • Prognostic significance of "short-term" effects of chemotherapy on MYC and histone H3 mRNA levels in acute leukemia patients [4].
  • Sequence analysis of acetylation and methylation in two histone H3 variants of alfalfa [26].
  • VLS sera had substantial IgM antibodies to histone demonstrated by enzyme immunoassay, and further analysis of representative sera showed predominant antibody activity to histone class 3 (H-3) [27].

References

  1. Chromatin modification of the trefoil factor 1 gene in human breast cancer cells by the Ras/mitogen-activated protein kinase pathway. Espino, P.S., Li, L., He, S., Yu, J., Davie, J.R. Cancer Res. (2006) [Pubmed]
  2. In vivo protein binding sites and nuclease hypersensitivity in the promoter region of a cell cycle regulated human H3 histone gene. Pauli, U., Chrysogelos, S., Nick, H., Stein, G., Stein, J. Nucleic Acids Res. (1989) [Pubmed]
  3. Expression and purification of recombinant human histones. Tanaka, Y., Tawaramoto-Sasanuma, M., Kawaguchi, S., Ohta, T., Yoda, K., Kurumizaka, H., Yokoyama, S. Methods (2004) [Pubmed]
  4. Prognostic significance of "short-term" effects of chemotherapy on MYC and histone H3 mRNA levels in acute leukemia patients. Venturelli, D., Lange, B., Narni, F., Selleri, L., Mariano, M.T., Torelli, U., Gewirtz, A.M., Calabretta, B. Proc. Natl. Acad. Sci. U.S.A. (1988) [Pubmed]
  5. Sea urchin (lytechinus pictus) late-stage histone H3 and H4 genes: characterization and mapping of a clustered but nontandemly linked multigene family. Childs, G., Nocente-McGrath, C., Lieber, T., Holt, C., Knowles, J.A. Cell (1982) [Pubmed]
  6. Cell-cycle regulatory sequences in a hamster histone promoter and their interactions with cellular factors. Artishevsky, A., Wooden, S., Sharma, A., Resendez, E., Lee, A.S. Nature (1987) [Pubmed]
  7. Isolation of a mammalian sequence capable of conferring cell cycle regulation to a heterologous gene. Artishevsky, A., Grafsky, A., Lee, A.S. Science (1985) [Pubmed]
  8. Identification of an histone H3 acetylated/K4-methylated-bound intragenic enhancer regulatory for urokinase receptor expression. Wang, H., Yan, C., Asangani, I., Allgayer, H., Boyd, D.D. Oncogene (2007) [Pubmed]
  9. Cell-cycle-dependent gene expression studied by two-colour fluorescent detection of a mRNA and histone mRNA. Dirks, R.W., Raap, A.K. Histochem. Cell Biol. (1995) [Pubmed]
  10. Radiosensitization of tumour cells by cantharidin and some analogues. Price, W.A., Stobbe, C.C., Park, S.J., Chapman, J.D. Int. J. Radiat. Biol. (2004) [Pubmed]
  11. The assessment of cell proliferation during 9,10-dimethyl-1,2-benzanthracene-induced hamster tongue carcinogenesis by means of histone H3 mRNA in situ hybridization. Sakamoto, R., Nitta, T., Kamikawa, Y., Sugihara, K., Hasui, K., Tsuyama, S., Murata, F. Medical electron microscopy : official journal of the Clinical Electron Microscopy Society of Japan. (2004) [Pubmed]
  12. A major human histone gene cluster on the long arm of chromosome 1. Green, L., Van Antwerpen, R., Stein, J., Stein, G., Tripputi, P., Emanuel, B., Selden, J., Croce, C. Science (1984) [Pubmed]
  13. Regulation of HIV-1 gene expression by histone acetylation and factor recruitment at the LTR promoter. Lusic, M., Marcello, A., Cereseto, A., Giacca, M. EMBO J. (2003) [Pubmed]
  14. Enhancer-facilitated expression of prokaryotic and eukaryotic genes using human histone gene 5' regulatory sequences. Marashi, F., Helms, S., Shiels, A., Silverstein, S., Greenspan, D.S., Stein, G., Stein, J. Biochem. Cell Biol. (1986) [Pubmed]
  15. Temporal expression of late histone messenger RNA in the sea urchin Lytechinus pictus. Knowles, J.A., Childs, G.J. Proc. Natl. Acad. Sci. U.S.A. (1984) [Pubmed]
  16. The conserved CAAGAAAGA spacer sequence is an essential element for the formation of 3' termini of the sea urchin H3 histone mRNA by RNA processing. Georgiev, O., Birnstiel, M.L. EMBO J. (1985) [Pubmed]
  17. Changes in the stability of a human H3 histone mRNA during the HeLa cell cycle. Morris, T.D., Weber, L.A., Hickey, E., Stein, G.S., Stein, J.L. Mol. Cell. Biol. (1991) [Pubmed]
  18. Use of intracellular H3 messenger RNA as a marker to determine the proliferation pattern of normal and 7,12-dimethylbenz[a]anthracene-transformed hamster oral epithelium. Wong, D.T., Chou, M.Y., Chang, L.C., Gallagher, G.T. Cancer Res. (1990) [Pubmed]
  19. How might 12 (R) HETE cause the inhibition of Na,K-ATPase? Whikehart, D.R., Edelhauser, H.F., Woods, W.D. Mol. Vis. (1997) [Pubmed]
  20. Structural basis for the specific recognition of methylated histone H3 lysine 4 by the WD-40 protein WDR5. Han, Z., Guo, L., Wang, H., Shen, Y., Deng, X.W., Chai, J. Mol. Cell (2006) [Pubmed]
  21. A critical role of helix 3-helix 5 interaction in steroid hormone receptor function. Zhang, J., Simisky, J., Tsai, F.T., Geller, D.S. Proc. Natl. Acad. Sci. U.S.A. (2005) [Pubmed]
  22. Histone H3 messenger RNA in situ hybridization correlates with in vivo bromodeoxyuridine labeling of S-phase cells in rat colonic epithelium. Konishi, H., Steinbach, G., Terry, N.H., Lee, J.J., Dubin, J.A., Glober, G.A., Fujita, K., Spaulding, D., Cass, L., Hittelman, W.N. Cancer Res. (1996) [Pubmed]
  23. Histone genes of Volvox carteri: DNA sequence and organization of two H3-H4 gene loci. Müller, K., Schmitt, R. Nucleic Acids Res. (1988) [Pubmed]
  24. Detection of cell proliferation in tissue sections. Bacchi, C.E., Gown, A.M. Braz. J. Med. Biol. Res. (1993) [Pubmed]
  25. Prothymosin alpha binds histones in vitro and shows activity in nucleosome assembly assay. Díaz-Jullien, C., Pérez-Estévez, A., Covelo, G., Freire, M. Biochim. Biophys. Acta (1996) [Pubmed]
  26. Sequence analysis of acetylation and methylation in two histone H3 variants of alfalfa. Waterborg, J.H. J. Biol. Chem. (1990) [Pubmed]
  27. IgM anti-histone H-3 antibody associated with undifferentiated rheumatic disease syndromes. Molden, D.P., Klipple, G.L., Peebles, C.L., Rubin, R.L., Nakamura, R.M., Tan, E.M. Arthritis Rheum. (1986) [Pubmed]
 
WikiGenes - Universities