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Gene Review

adhP  -  alcohol dehydrogenase

Escherichia coli O157:H7 str. EDL933

 
 
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Disease relevance of adhP

  • Novel antioxidant role of alcohol dehydrogenase E from Escherichia coli [1].
  • We have studied two enzymes of a newly described family of dehydrogenases with high sequence homology, 1,2-propanediol oxidoreductase of Escherichia coli and alcohol dehydrogenase II of Zymomonas mobilis [2].
  • A phylogenetic analysis locates iPDH within a cluster with fermentative ADHs from bacteria, sharing 74% similarity and 60% identity with Ralstonia eutropha ADH [3].
  • We have determined the X-ray structures of the NADP(H)-dependent alcohol dehydrogenase of Clostridiim beijerinckii (CBADH) in the apo and holo-enzyme forms at 2.15 A and 2.05 A resolution, respectively, and of the holo-alcohol dehydrogenase of Thermoanaerobacter brockii (TBADH) at 2.5 A [4].
  • Crystal structure and amide H/D exchange of binary complexes of alcohol dehydrogenase from Bacillus stearothermophilus: insight into thermostability and cofactor binding [5].
 

High impact information on adhP

  • The amino acid sequences of enzymes like alcohol dehydrogenase and glyceraldehyde-3-phosphate dehydrogenase are strongly conserved across all phyla [6].
  • The short-chain alcohol dehydrogenase ABA2 catalyzes the conversion of xanthoxin to abscisic aldehyde [7].
  • The Drosophila sequence-specific DNA binding protein, Adf-1, is capable of activating transcription of the alcohol dehydrogenase gene, Adh, and is implicated in the transcriptional control of other developmentally regulated genes [8].
  • An alcR mutant obtained by deletion of the two specific targets in the cis-acting region of the alcR gene is unable to grow on ethanol and does not express any alcohol dehydrogenase activity [9].
  • The characterization of the two bacterially expressed Phytomonas enzymes and the comparison of their kinetic properties with those of the wild-type iPDH and of the R. eutropha ADH strongly support the idea of a horizontal gene transfer event from a bacterium to a trypanosomatid to explain the origin of the iPDH in Phytomonas [3].
 

Chemical compound and disease context of adhP

  • In addition the target sizes of alcohol dehydrogenase (from yeast and horse liver), beta-galactosidase (from Escherichia coli), lactate dehydrogenase (endogenous from rat brain), and 5-HT2 receptors, acetylcholine muscarine receptors, and [35S] butyl bicyclophosphorothionate tertiary binding sites from rat brain were determined [10].
  • The AdhE protein of Escherichia coli is a homopolymer of 96-kDa subunits harboring three Fe(2+)-dependent catalytic functions: acetaldehyde-CoA dehydrogenase, alcohol dehydrogenase, and pyruvate formatelyase (PFL) deactivase [11].
  • Purified recombinant VISP expressed in Escherichia coli promoted the functional folding of alpha-glucosidase after urea denaturation and also prevented thermal aggregation of alcohol dehydrogenase [12].
  • A biocatalytic system using E. coli lysates containing P450 variants as the epoxidation catalysts and in vitro NADPH regeneration by the alcohol dehydrogenase from Thermoanaerobium brockii generates each of the epoxide enantiomers, without additional cofactor [13].
  • The optical properties of NADH bound to nicotinoprotein alcohol dehydrogenase differ considerably from NADH (tightly) bound to UDP-galactose epimerase from Escherichia coli [14].
 

Biological context of adhP

  • In contrast, the kinetics toward retinoids was only slightly affected by the mutations at position 294, compatible with a more conserved function of mammalian class IV alcohol dehydrogenase in retinoid metabolism [15].
  • It is not susceptible toward hydrolysis by NADase, reduction by alcohol dehydrogenase, or nucleophilic attack by cyanide [16].
  • In order to elucidate the mechanism of the ethanol induction, a gene cluster encoding the dehydrogenase and cytochrome c subunits of ADH was cloned from this strain, and its nucleotide sequence was determined [17].
  • Cloning and expression of the alcohol dehydrogenase regulon from A. lwoffii RAG-1 were accomplished by using the Acinetobacter shuttle plasmid [18].
  • Alcohol dehydrogenase gene expression in potato following elicitor and stress treatment [19].
 

Anatomical context of adhP

  • Degenerate oligonucleotide primers were used to amplify by polymerase chain reaction 500-base pair fragments of alcohol dehydrogenase cDNAs from chick embryo limb buds and heart. cDNA fragments that encode an unknown putative alcohol dehydrogenase as well as the class III alcohol dehydrogenase were identified [20].
  • We developed a rapid bioluminescent method by genetically engineering the genes encoding bacterial luciferase, alcohol dehydrogenase, and alkane hydroxylase into a plasmid for simultaneous expression in an E. coli host cell line [21].
  • The observation that a dose dependent increase of mutants in the liver (and to a lower extent in the spleens) of treated animals takes place under conditions in which ADH activity is blocked, whereas several microsomal enzymes are stimulated, indicated that besides oxidation of NDELA by ADH other metabolic activation pathways are involved [22].
  • The increase in gene expression ranged from three-fold for Ubi1 and Adh1 in protoplasts to 50-fold for Act1 in bombarded wheat tissues [23].
  • Furthermore, in situ reconstitution experiments showed that ADH is able to accept electrons from ubiquinol present in Escherichia coli membranes, suggesting the ubiquinol oxidation activity of ADH has a physiological function [24].
 

Associations of adhP with chemical compounds

  • The multifunctional isopropyl alcohol dehydrogenase of Phytomonas sp. could be the result of a horizontal gene transfer from a bacterium to the trypanosomatid lineage [3].
  • Phytomonas iPDH and R. eutropha ADH are able to use a wide range of substrates with similar Km values such as primary and secondary alcohols, diols, and aldehydes, as well as ketones such as acetone, diacetyl, and acetoin [3].
  • Chymotrypsin dissects the AdhE polypeptide between Phe762 and Ser763, thereby retaining the alcohol dehydrogenase activity on the NH2-terminal core, but destroying all other activities [11].
  • The Bacillus methanolicus methanol dehydrogenase (MDH) is a decameric nicotinoprotein alcohol dehydrogenase (family III) with one Zn(2+) ion, one or two Mg(2+) ions, and a tightly bound cofactor NAD(H) per subunit [25].
  • Under reducing conditions (10 mM dithiothreitol) and at a low concentration (0.1-0. 3 microM) relative to the unfolded protein substrate, PDI facilitates aggregation of alcohol dehydrogenase (11 microM) that has been denatured thermally or chemically [26].
 

Analytical, diagnostic and therapeutic context of adhP

References

  1. Novel antioxidant role of alcohol dehydrogenase E from Escherichia coli. Echave, P., Tamarit, J., Cabiscol, E., Ros, J. J. Biol. Chem. (2003) [Pubmed]
  2. Metal-catalyzed oxidation of Fe2+ dehydrogenases. Consensus target sequence between propanediol oxidoreductase of Escherichia coli and alcohol dehydrogenase II of Zymomonas mobilis. Cabiscol, E., Aguilar, J., Ros, J. J. Biol. Chem. (1994) [Pubmed]
  3. The multifunctional isopropyl alcohol dehydrogenase of Phytomonas sp. could be the result of a horizontal gene transfer from a bacterium to the trypanosomatid lineage. Molinas, S.M., Altabe, S.G., Opperdoes, F.R., Rider, M.H., Michels, P.A., Uttaro, A.D. J. Biol. Chem. (2003) [Pubmed]
  4. NADP-dependent bacterial alcohol dehydrogenases: crystal structure, cofactor-binding and cofactor specificity of the ADHs of Clostridium beijerinckii and Thermoanaerobacter brockii. Korkhin, Y., Kalb(Gilboa), A.J., Peretz, M., Bogin, O., Burstein, Y., Frolow, F. J. Mol. Biol. (1998) [Pubmed]
  5. Crystal structure and amide H/D exchange of binary complexes of alcohol dehydrogenase from Bacillus stearothermophilus: insight into thermostability and cofactor binding. Ceccarelli, C., Liang, Z.X., Strickler, M., Prehna, G., Goldstein, B.M., Klinman, J.P., Bahnson, B.J. Biochemistry (2004) [Pubmed]
  6. On the conservation of protein sequences in evolution. Kisters-Woike, B., Vangierdegom, C., Müller-Hill, B. Trends Biochem. Sci. (2000) [Pubmed]
  7. The short-chain alcohol dehydrogenase ABA2 catalyzes the conversion of xanthoxin to abscisic aldehyde. González-Guzmán, M., Apostolova, N., Bellés, J.M., Barrero, J.M., Piqueras, P., Ponce, M.R., Micol, J.L., Serrano, R., Rodríguez, P.L. Plant Cell (2002) [Pubmed]
  8. Cloning of Drosophila transcription factor Adf-1 reveals homology to Myb oncoproteins. England, B.P., Admon, A., Tjian, R. Proc. Natl. Acad. Sci. U.S.A. (1992) [Pubmed]
  9. Identification of the promoter region involved in the autoregulation of the transcriptional activator ALCR in Aspergillus nidulans. Kulmburg, P., Sequeval, D., Lenouvel, F., Mathieu, M., Felenbok, B. Mol. Cell. Biol. (1992) [Pubmed]
  10. The apparent target size of rat brain benzodiazepine receptor, acetylcholinesterase, and pyruvate kinase is highly influenced by experimental conditions. Nielsen, M., Braestrup, C. J. Biol. Chem. (1988) [Pubmed]
  11. Ultrastructure and pyruvate formate-lyase radical quenching property of the multienzymic AdhE protein of Escherichia coli. Kessler, D., Herth, W., Knappe, J. J. Biol. Chem. (1992) [Pubmed]
  12. Molecular cloning of a novel chaperone-like protein induced by rhabdovirus infection with sequence similarity to the bacterial extracellular solute-binding protein family 5. Cho, W.J., Yoon, W.J., Moon, C.H., Cha, S.J., Song, H., Cho, H.R., Jang, S.J., Chung, D.K., Jeong, C.S., Park, J.W. J. Biol. Chem. (2002) [Pubmed]
  13. Enantioselective epoxidation of terminal alkenes to (R)- and (S)-epoxides by engineered cytochromes P450 BM-3. Kubo, T., Peters, M.W., Meinhold, P., Arnold, F.H. Chemistry (Weinheim an der Bergstrasse, Germany) (2006) [Pubmed]
  14. Optical spectroscopy of nicotinoprotein alcohol dehydrogenase from Amycolatopsis methanolica: a comparison with horse liver alcohol dehydrogenase and UDP-galactose epimerase. Piersma, S.R., Visser, A.J., de Vries, S., Duine, J.A. Biochemistry (1998) [Pubmed]
  15. Molecular basis for differential substrate specificity in class IV alcohol dehydrogenases: a conserved function in retinoid metabolism but not in ethanol oxidation. Crosas, B., Allali-Hassani, A., Martínez, S.E., Martras, S., Persson, B., Jörnvall, H., Parés, X., Farrés, J. J. Biol. Chem. (2000) [Pubmed]
  16. Discovery of a third coenzyme in sarcosine oxidase. Willie, A., Jorns, M.S. Biochemistry (1995) [Pubmed]
  17. Induction by ethanol of alcohol dehydrogenase activity in Acetobacter pasteurianus. Takemura, H., Kondo, K., Horinouchi, S., Beppu, T. J. Bacteriol. (1993) [Pubmed]
  18. Isolation, characterization, and sequence analysis of cryptic plasmids from Acinetobacter calcoaceticus and their use in the construction of Escherichia coli shuttle plasmids. Minas, W., Gutnick, D.L. Appl. Environ. Microbiol. (1993) [Pubmed]
  19. Alcohol dehydrogenase gene expression in potato following elicitor and stress treatment. Matton, D.P., Constabel, P., Brisson, N. Plant Mol. Biol. (1990) [Pubmed]
  20. cDNA sequence and catalytic properties of a chick embryo alcohol dehydrogenase that oxidizes retinol and 3beta,5alpha-hydroxysteroids. Kedishvili, N.Y., Gough, W.H., Chernoff, E.A., Hurley, T.D., Stone, C.L., Bowman, K.D., Popov, K.M., Bosron, W.F., Li, T.K. J. Biol. Chem. (1997) [Pubmed]
  21. Detection of alkanes, alcohols, and aldehydes using bioluminescence. Minak-Bernero, V., Bare, R.E., Haith, C.E., Grossman, M.J. Biotechnol. Bioeng. (2004) [Pubmed]
  22. Studies on the metabolic activation of diethanolnitrosamine in animal-mediated and in vitro assays using Escherichia coli K-12 343/113 as an indicator. Knasmüller, S., Stehlik, G., Mohn, G. J. Cancer Res. Clin. Oncol. (1986) [Pubmed]
  23. Adenine methylation at dam sites increases transient gene expression in plant cells. Graham, M.W., Larkin, P.J. Transgenic Res. (1995) [Pubmed]
  24. The quinohemoprotein alcohol dehydrogenase of Gluconobacter suboxydans has ubiquinol oxidation activity at a site different from the ubiquinone reduction site. Matsushita, K., Yakushi, T., Toyama, H., Adachi, O., Miyoshi, H., Tagami, E., Sakamoto, K. Biochim. Biophys. Acta (1999) [Pubmed]
  25. Identification of a magnesium-dependent NAD(P)(H)-binding domain in the nicotinoprotein methanol dehydrogenase from Bacillus methanolicus. Hektor, H.J., Kloosterman, H., Dijkhuizen, L. J. Biol. Chem. (2002) [Pubmed]
  26. Facilitated protein aggregation. Effects of calcium on the chaperone and anti-chaperone activity of protein disulfide-isomerase. Primm, T.P., Walker, K.W., Gilbert, H.F. J. Biol. Chem. (1996) [Pubmed]
  27. Aryl-alcohol dehydrogenase from the white-rot fungus Phanerochaete chrysosporium. Gene cloning, sequence analysis, expression, and purification of the recombinant enzyme. Reiser, J., Muheim, A., Hardegger, M., Frank, G., Fiechter, A. J. Biol. Chem. (1994) [Pubmed]
  28. A novel aromatic alcohol dehydrogenase in higher plants: molecular cloning and expression. Goffner, D., Van Doorsselaere, J., Yahiaoui, N., Samaj, J., Grima-Pettenati, J., Boudet, A.M. Plant Mol. Biol. (1998) [Pubmed]
  29. Cloning and characterization of the gene for a methanol-utilising alcohol dehydrogenase from Bacillus stearothermophilus. Dowds, B.C., Sheehan, M.C., Bailey, C.J., McConnell, D.J. Gene (1988) [Pubmed]
  30. Features of structural zinc in mammalian alcohol dehydrogenase. Site-directed mutagenesis of the zinc ligands. Jeloková, J., Karlsson, C., Estonius, M., Jörnvall, H., Höög, J.O. Eur. J. Biochem. (1994) [Pubmed]
  31. Crystallization and preliminary X-ray diffraction studies of a novel alcohol dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix. Guy, J.E., Isupov, M.N., Littlechild, J.A. Acta Crystallogr. D Biol. Crystallogr. (2003) [Pubmed]
 
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