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Hoffmann, R. A wiki for the life sciences where authorship matters. Nature Genetics (2008)
 
Gene Review

CYCSP39  -  cytochrome c, somatic pseudogene 39

Homo sapiens

Synonyms: HC1, HCP39
 
 
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Disease relevance of CYCSP39

  • The most sensitive and specific test combination for the diagnosis of reflux esophagitis appears to be esophageal biopsy with esophageal pH study after HC1 [1].
  • Both the thiophene analogue and 5,10-dideazatetrahydrofolate inhibited the in vivo growth of murine 6C3HED lymphosarcoma, murine C3H mammary carcinoma, and human xenograft HXGC3, HC1, and VRC5 colon carcinomas by 95-100% [2].
  • A membrane antigen (HC1) selectively present on hairy cell leukemia cells, endothelial cells, and epidermal basal cells [3].
  • Intraoesophageal pressures were recorded in 13 endoscopy negative subjects with gastro-oesophageal reflux disease in whom saline, HC1 0.1 N, and saline solutions were infused (1.5 ml/min) blindly in the oesophageal body, 6 cm distal to the upper oesophageal sphincter for three consecutive periods of 45 minutes each [4].
  • The antigen HC1/6 is also expressed by normal tissue macrophages in tonsil, lung and kidney, as well as in skin biopsies from pathologies such as sarcoidosis and lepromatous leprosy [5].
 

Psychiatry related information on CYCSP39

  • When heated with NaHCO3 in DMF, the 5'-bromo carbonate Id affords the anhydro bromo derivative IIb (50%) which is converted to the 2',5'-dichloro derivative IIIc (86%) on heating with HC1/DMF [6].
  • There are five major approaches to therapy of enuresis: psychological, psycho-physiological, medication (particularly imipramine HC1), conditioning therapy, and dietary restrictions [7].
  • Psychomotor procedures to distinguish between antidepressant medications: a comparison of the effects of nomifensine maleate, imipramine HC1, and placebo on the psychomotor performance of normal males [proceedings] [8].
 

High impact information on CYCSP39

  • The isoosmolar test solution (200 ml, 100 mM HC1, 54 mM mannitol, [14C]polyethylene glycol) was instilled into the stomach and removed 15 min later for four 15-min periods [9].
  • Two stable sublines of MDA-MB-231 cells (HC1 and HE5) expressing functional estrogen receptors were studied for their ability to grow and invade in vitro and to metastasize in athymic nude mice [10].
  • A subpopulation of the antiserum was eluted from this column with 4 M guanidine - HC1 [11].
  • We searched for human equivalents to these sequences, and isolated a clone with a 9.6 kb insert (633b) from a laryngeal carcinoma DNA library, that strongly cross-hybridised with both the HPV18 E5 and HC1 sequences [12].
  • The high molecular mass glycosaminoglycan hyaluronan (HA) can become modified by the covalent attachment of heavy chains (HCs) derived from the serum protein inter-alpha-inhibitor (IalphaI), which is composed of three subunits (HC1, HC2 and bikunin) linked together via a chondroitin sulfate moiety [13].
 

Chemical compound and disease context of CYCSP39

 

Biological context of CYCSP39

  • These staining patterns were not altered when substrate cells and chromosomes were treated with RNase, 0.1 M HC1, or 4 M urea, but they were abolished by treatment with DNase and trypsin [19].
  • Of these, there is a clear bias in gene expression change for genes in the region of the HC1 [20].
  • Alkylation at the nitrogen atom of amide linkages generates stable labels; full hydrolysis with 6 N HC1 then leads to N-benzyl amino acids characteristic of those sites [21].
  • Boron trifluoride (BF3) and HC1/methanol were adopted as the cyclization/cleavage and conversion reagents to suppress the amino acid residue racemization [22].
  • However, the results indicated that there was no significant correlation between the bioavailability and leachates using neutral pH water or 1M HC1 [23].
 

Anatomical context of CYCSP39

  • A monoclonal antibody (alpha HC1) raised against HCL cells reacted specifically with HCL cells and not with other normal or leukemic B cell types [3].
  • We, therefore, studied the effect on plasma concentrations of somatostatin of infusion of 0.1 N HC1 into the stomach and duodenum of healthy subjects [24].
  • Oral supplementation of seven asthmatics with 50 mg pyridoxine as pyridoxine X HC1 twice daily failed to produce a sustained elevation of PLP in either the plasma or erythrocytes [25].
  • The expression of the HC1/6 antigen is increased up to 5-fold when U-937 (promonocytic) and HL-60 (myelomonocytic) cell lines are stimulated with phorbol 12-myristate 13-acetate [5].
  • Conversely, the expression of the HC1/6 antigen is down-regulated in monocytes upon treatment with interferon-gamma [5].
 

Associations of CYCSP39 with chemical compounds

  • A TSG-6 hydroxyl group reacts with the ester bond between the alpha-carbonyl of the C-terminal Asp residues of HC1 or HC2 and carbon-6 of an internal N-acetylgalactosamine of the chondroitin-4-sulfate chain [26].
  • When heated with imidazole, compound Ie affords the 2,2'-anhydro derivative IIa (76%) which is converted to the 2'-chloro derivative IIIa (88%) on heating with HC1/DMF [6].
  • Extensive incorporation of oxygen-18 at position O4 of the pyrimidine nucleus results from exchange between H218O and nucleosides or bases in 1N HC1 at 100 degrees [27].
  • The method involves fixation of cells in 70% ethanol, extraction of histones with HC1, and thermal denaturation of DNA [28].
  • It is proposed that the mechanism of inactivation involves Schiff base formation between inactivator and enzyme-bound pyridoxal and subsequent elimination of HC1 from dichloroalanine or HF from trifluoroalanine [29].
 

Analytical, diagnostic and therapeutic context of CYCSP39

  • Sequence alignments showed a close similarity to the HC1 and HPV18 E5 sequences, as well as to Q300 and different viral and human growth factors, allowing to fit a putative phylogenetic tree [12].
  • Using a panel of monoclonal antibodies and three anti-hairy cell sera (alpha HC1 and alpha HC2 of Posnett and 4B122 prepared by the authors), hairy cells were phenotyped on frozen sections of cell pellets from blood and spleen of 11 Japanese patients with hairy cell leukemia (HCL) [30].
  • A bacterium (strain HC1) capable of assimilating rice bran hemicellulose was isolated from a soil and identified as belonging to the genus Paenibacillus through taxonomical and 16S rDNA sequence analysis [31].
  • After purification on TLC and transesterification with 3 N methanolic HC1, methyl esters of C16:0, C18:0 and C18:1 fatty acids were identified by gas-liquid chromatography [32].
  • On cultures of human and rodent fibroblasts, and on frozen sections of rabbit liver and rat kidney, the antibody gave a diffuse, homogenous immunofluorescence staining of cell nuclei which could be abolished by treatment with 0.1 M HC1 or 2 M NaCl and restored by reconstitution with histones, suggesting a reaction with nuclear histones [33].

References

  1. Evaluation of esophageal tests in the diagnosis of reflux esophagitis. Behar, J., Biancani, P., Sheahan, D.G. Gastroenterology (1976) [Pubmed]
  2. A novel class of monoglutamated antifolates exhibits tight-binding inhibition of human glycinamide ribonucleotide formyltransferase and potent activity against solid tumors. Habeck, L.L., Leitner, T.A., Shackelford, K.A., Gossett, L.S., Schultz, R.M., Andis, S.L., Shih, C., Grindey, G.B., Mendelsohn, L.G. Cancer Res. (1994) [Pubmed]
  3. A membrane antigen (HC1) selectively present on hairy cell leukemia cells, endothelial cells, and epidermal basal cells. Posnett, D.N., Marboe, C.C., Knowles, D.M., Jaffe, E.A., Kunkel, H.G. J. Immunol. (1984) [Pubmed]
  4. Effects of intraluminal acidification on oesophageal motor activity. Bontempo, I., Piretta, L., Corazziari, E., Michetti, F., Anzini, F., Torsoli, A. Gut (1994) [Pubmed]
  5. Characterization of a novel myeloid antigen regulated during differentiation of monocytic cells. Cabañas, C., Sanchez-Madrid, F., Bellon, T., Figdor, C.G., Te Velde, A.A., Fernandez, J.M., Acevedo, A., Bernabeu, C. Eur. J. Immunol. (1989) [Pubmed]
  6. 2',3'=Carbonates in the synthesis of uridine 5'-deoxy and 2',5'-dideoxy derivatives. Hein, L., Draser, P., Beránek, J. Nucleic Acids Res. (1976) [Pubmed]
  7. The enuretic child. Bindelglas, P.M. The Journal of family practice. (1975) [Pubmed]
  8. Psychomotor procedures to distinguish between antidepressant medications: a comparison of the effects of nomifensine maleate, imipramine HC1, and placebo on the psychomotor performance of normal males [proceedings]. Nash, R.J., Wittenborn, J.R., Flaherty, C.F. Psychopharmacology bulletin. (1977) [Pubmed]
  9. Protective effect of acetaminophen against aspirin- and ethanol-induced damage to the human gastric mucosa. Stern, A.I., Hogan, D.L., Kahn, L.H., Isenberg, J.I. Gastroenterology (1984) [Pubmed]
  10. Activation of estrogen receptor transfected into a receptor-negative breast cancer cell line decreases the metastatic and invasive potential of the cells. Garcia, M., Derocq, D., Freiss, G., Rochefort, H. Proc. Natl. Acad. Sci. U.S.A. (1992) [Pubmed]
  11. Isolation of antibodies specific to sickle hemoglobin by affinity chromatography using a synthetic peptide. Young, N.S., Curd, J.G., Eastlake, A., Furie, B., Schechter, A.N. Proc. Natl. Acad. Sci. U.S.A. (1975) [Pubmed]
  12. A transcribed human sequence related to the mouse HC1 and the human papillomavirus type 18 E5 genes is located at chromosome 7p13-14. Geisen, C., Delius, H., Lichter, P., Kahn, T. Hum. Mol. Genet. (1995) [Pubmed]
  13. Characterization of complexes formed between TSG-6 and inter-alpha-inhibitor that act as intermediates in the covalent transfer of heavy chains onto hyaluronan. Rugg, M.S., Willis, A.C., Mukhopadhyay, D., Hascall, V.C., Fries, E., Fülöp, C., Milner, C.M., Day, A.J. J. Biol. Chem. (2005) [Pubmed]
  14. Dopaminergic function in two patients with catalepsy. Cervantes, P., Lal, S., Smith, F., Guyda, H. Acta psychiatrica Scandinavica. (1977) [Pubmed]
  15. 3alpha-Hydroxy-5beta,14beta-chol-8-en-24-oic acid and its isomer, dehydration products of chenodeoxycholic acid obtained by treatment with concentrated HC1. Harano, T., Fujita, C., Harano, K., Yamasaki, K. Steroids (1977) [Pubmed]
  16. The influences of propranolol on serum gastrin concentration and hydrochloric acid secretion in response to hypoglycemia in normal subjects. Kaess, H., Kuntzen, O., Teckentrupp, U., Dörner, M. Digestion (1975) [Pubmed]
  17. Effects of colesevelam HC1 on sterol and bile acid excretion in patients with type IIa hypercholesterolemia. Donovan, J.M., Von Bergmann, K., Setchell, K.D., Isaacsohn, J., Pappu, A.S., Illingworth, D.R., Olson, T., Burke, S.K. Dig. Dis. Sci. (2005) [Pubmed]
  18. Double-blind randomized, multicenter study comparing aluminium phosphate gel with rantitidine in the short-term treatment of duodenal ulcer. Parente, F., Bianchi Porro, G., Canali, A., Bensi, G. Hepatogastroenterology (1995) [Pubmed]
  19. Anti-NOR 90. A new autoantibody in scleroderma that recognizes a 90-kDa component of the nucleolus-organizing region of chromatin. Rodriguez-Sanchez, J.L., Gelpi, C., Juarez, C., Hardin, J.A. J. Immunol. (1987) [Pubmed]
  20. Isolation and confirmation of a calcium excretion quantitative trait locus on chromosome 1 in genetic hypercalciuric stone-forming congenic rats. Hoopes, R.R., Middleton, F.A., Sen, S., Hueber, P.A., Reid, R., Bushinsky, D.A., Scheinman, S.J. J. Am. Soc. Nephrol. (2006) [Pubmed]
  21. Alkylation of amide linkages and cleavage of the C chain in the enzyme-activated-substrate inhibition of alpha-chymotrypsin with N-nitrosamides. Donadio, S., Perks, H.M., Tsuchiya, K., White, E.H. Biochemistry (1985) [Pubmed]
  22. Development of an amino acid sequence and D/L-configuration determination method of peptide with a new fluorescence Edman reagent, 7-methylthio-4-(2,1,3-benzoxadiazolyl) isothiocyanate. Toriba, A., Adzuma, K., Santa, T., Imai, K. Anal. Chem. (2000) [Pubmed]
  23. Speciation and absolute bioavailability: risk assessment of arsenic-contaminated sites in a residential suburb in Canberra. Ng, J.C., Kratzmann, S.M., Qi, L., Crawley, H., Chiswell, B., Moore, M.R. The Analyst. (1998) [Pubmed]
  24. Does gastric acid release plasma somatostatin in man? Lucey, M.R., Wass, J.A., Fairclough, P.D., O'Hare, M., Kwasowski, P., Penman, E., Webb, J., Rees, L.H. Gut (1984) [Pubmed]
  25. Depressed plasma pyridoxal phosphate concentrations in adult asthmatics. Reynolds, R.D., Natta, C.L. Am. J. Clin. Nutr. (1985) [Pubmed]
  26. The TSG-6 and I alpha I interaction promotes a transesterification cleaving the protein-glycosaminoglycan-protein (PGP) cross-link. Sanggaard, K.W., Karring, H., Valnickova, Z., Thøgersen, I.B., Enghild, J.J. J. Biol. Chem. (2005) [Pubmed]
  27. Incorporation of oxygen-18 into nucleosides and bases. Puzo, G., Schram, K.H., McCloskey, J.A. Nucleic Acids Res. (1977) [Pubmed]
  28. A new method to discriminate G1, S, G2, M, and G1 postmitotic cells. Giaretti, W., Nüsse, M., Bruno, S., Di Vinci, A., Geido, E. Exp. Cell Res. (1989) [Pubmed]
  29. Inactivation of pyridoxal phosphate dependent enzymes by mono- and polyhaloalanines. Silverman, R.B., Abeles, R.H. Biochemistry (1976) [Pubmed]
  30. Hairy cell leukemia in Japanese patients: a study with monoclonal antibodies. Katayama, I., Hirashima, K., Maruyama, K., Hoshino, S., Abe, T., Furusawa, S., Iguchi, Y. Leukemia (1987) [Pubmed]
  31. Degradation of rice bran hemicellulose by Paenibacillus sp. strain HC1: gene cloning, characterization and function of beta-D-glucosidase as an enzyme involved in degradation. Harada, K.M., Tanaka, K., Fukuda, Y., Hashimoto, W., Murata, K. Arch. Microbiol. (2005) [Pubmed]
  32. Presence of covalently attached fatty acids in rat apolipoprotein B via thiolester linkages. Kamanna, V.S., Lee, D.M. Biochem. Biophys. Res. Commun. (1989) [Pubmed]
  33. A monoclonal antibody to the surface membrane of human platelets which inhibits ristocetin- and collagen-induced platelet aggregation reacts with H1 histones of cell nuclei. Cosgrove, L., Alderuccio, F., Toh, B.H., Pedersen, J., Holliday, A., McKenzie, I. Clin. Exp. Immunol. (1987) [Pubmed]
 
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