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Hoffmann, R. A wiki for the life sciences where authorship matters. Nature Genetics (2008)
 
Chemical Compound Review

PEG 1000     hydrogen

Synonyms: Hydrion, monohydrogen, H-atom, hydrogen(.), Teflon 60, ...
 
 
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Disease relevance of hydrogen

 

Psychiatry related information on hydrogen

 

High impact information on hydrogen

 

Chemical compound and disease context of hydrogen

  • CONCLUSIONS: Proton MR spectroscopy is a useful diagnostic method for determining the proliferative or malignant potential of meningiomas according to the Cho/Cr ratio [15].
  • The effect of 600 mg of cimetidine given twice daily on 24-hour intragastric hydrogen ion (H+) concentration was compared with that of the standard regimen of 300 mg of cimetidine given four times daily in six patients with asymptomatic duodenal ulcer [16].
  • Background: Proton pump inhibitor-amoxicillin-metronidazole is recommended as second-line Helicobacter pylori therapy in Japan. The authors assessed the efficacy and safety of second-line eradication using the H(2)-receptor antagonist famotidine as a substitute for proton pump inhibitor [17].
  • These results confirmed that populations were separately adapted to H(+) or Al(3+) toxicity and this was dependent upon the soil characteristics at their site of collection [18].
  • On the conformational dependence of the proton chemical shifts in nucleosides and nucleotides. II. Proton shifts in the ribose ring of purine nucleosides as a function of the torsion angle about the glycosyl bond [19].
 

Biological context of hydrogen

  • These proteins have binuclear Cu active sites that are distant, that exhibit no exchange interaction, and that activate O(2) at a single Cu center to generate a reactive Cu(II)/O(2) species for H-atom abstraction from the C-H bond of substrates [20].
  • Human plasminogen. Proton NMR studies on kringle 1 [21].
  • Kinetics and Mechanism of Proton Transport across Membrane Nanopores [22].
  • After the H-atom abstraction, a reasonable pathway for substrate hydroxylation involves a "water-assisted" direct OH transfer to the substrate radical, which generates a high-energy Cu(II)(M)-oxyl species [23].
  • Metal-ligand charge-transfer-promoted photoelectronic Bergman cyclization of copper metalloenediynes: photochemical DNA cleavage via C-4' H-atom abstraction [24].
 

Anatomical context of hydrogen

  • Elastic incoherent neutron scattering is dominated by H atom scattering, and to study the dynamics of a selected part of BR, fully deuterated purple membrane with BR containing H-retinal, H-tryptophan, and H-methionine was prepared biosynthetically in Halobacterium salinarum [25].
  • The syn-Oriented 2-OH Provides a Favorable Proton Transfer Geometry in 1,2-Diol Monoester Aminolysis: Implications for the Ribosome Mechanism [26].
  • OBJECTIVE: Proton magnetic resonance spectroscopy ((1)H-MRS) studies of medicated patients with schizophrenia suggest high choline levels in the caudate nucleus [27].
  • Sodium/Proton exchanger 3 in the medulla oblongata and set point of breathing control [28].
  • A photoelectric apparatus and H2 electrode were applied to a small region of the cerebral cortex (left ectosylvian gyrus) for simultaneous measurement of the regional CBF [29].
 

Associations of hydrogen with other chemical compounds

  • The identification of the CN versus H atom exchange channel makes these reactions compelling candidates to synthesize unsaturated nitriles in solar system environments [30].
  • Reduced Prefrontal Glutamate/Glutamine and {gamma}-Aminobutyric Acid Levels in Major Depression Determined Using Proton Magnetic Resonance Spectroscopy [31].
  • While kinetic results suggest that the HO2 radical reacts with the double allylic H atom of the polyunsaturated fatty acids, thermodynamic approximations indicate that the reaction is exothermic by approximately 10 kcal/mol [32].
  • Mechanism of action of ethanolamine ammonia-lyase, an adenosylcobalamin-dependent enzyme. Proton nuclear magnetic resonance studies of the binding of adenine nucleosides and substrate to ethanolamine ammonia-lyase [33].
  • The Role of Invariant Amino Acid Residues at the Hydride Transfer Site of Proton-translocating Transhydrogenase [34].
 

Gene context of hydrogen

  • Hydrogen ion block was independent of voltage with K(d) values of 149+/-17.9 nM [H(+)] ( n=6) and 5.76+/-1.23 nM [H(+)] ( n=7) for TASK-1 and -2, respectively [35].
  • CAIX has a major role in regulating hydrogen ion (H+) flux and blockade of CAIX results in increased cell death under hypoxia, indicating that it is one mechanism of hypoxic adaptation [36].
  • Reaction thermodynamics and potential energy surfaces are calculated using density functional methods to investigate possible reactive Cu/O(2) species for H-atom abstraction in peptidylglycine alpha-hydroxylating monooxygenase (PHM), which has a noncoupled binuclear Cu active site [23].
  • METHODS: Proton MRS was serially used to measure brain metabolites in strokelike regions and in clinically uninvolved brain regions in a patient with MELAS [37].
  • We propose that the metabolism-based inactivation of nNOS by AG, DAG, and NAA occurs through oxidative removal of the hydrazine group and the formation of a radical intermediate that forms stable products after H-atom abstraction or reacts with the heme prosthetic moiety and inactivates nNOS [38].
 

Analytical, diagnostic and therapeutic context of hydrogen

  • Assessment of H2 clearance confirmed that overall hepatic microvascular perfusion was decreased [39].
  • As a consequence of the alternate oxidation and subsequent H atom migration processes, the atomic wire oxidation is actually found to occur on the H-terminated Si(100) surface at low temperatures without desorbing H atoms, as observed in our scanning tunneling microscopy experiment [40].
  • CONCLUSIONS: Proton magnetic resonance spectroscopy and short-latency evoked potentials are of great benefit in the prognostic evaluation after cardiopulmonary resuscitation [41].
  • (ii) Proton NMR titrations with AMP and MgATP suggested that substrate binding affinities and substrate-induced conformational changes are nearly identical between WT and R138K [42].
  • CONCLUSION: Proton MR spectra obtained in the liver of women with silicone gel-filled breast implants helped measure silicone exposure [43].

References

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  12. Effect of simulated systemic administration of aspirin, salicylate, and indomethacin on amphibian gastric mucosa. Rowe, P.H., Starlinger, M.J., Kasdon, E., Marrone, G., Silen, W. Gastroenterology (1986) [Pubmed]
  13. Use of hydrogen gas (H2) analysis to assess intestinal absorption. Studies in normal rats and in rats infected with the nematode, Nippostrongylus brasiliensis. Carter, E.A., Bloch, K.J., Cohen, S., Isselbacher, K.J., Walker, W.A. Gastroenterology (1981) [Pubmed]
  14. Effect of prostacyclin on gastric emptying and secretion in rhesus monkeys. Shea-Donohue, P.T., Myers, L., Castell, D.O., Dubois, A. Gastroenterology (1980) [Pubmed]
  15. Noninvasive evaluation of the malignant potential of intracranial meningiomas performed using proton magnetic resonance spectroscopy. Shino, A., Nakasu, S., Matsuda, M., Handa, J., Morikawa, S., Inubushi, T. J. Neurosurg. (1999) [Pubmed]
  16. Comparative effects of two cimetidine regimens on 24-hour intragastric acidity in patients with asymptomatic duodenal ulcer. Mahachai, V., Walker, K., Jamali, F., Navert, H., Cook, D., Symes, A., Thomson, A.B. Clinical therapeutics. (1984) [Pubmed]
  17. Comparison of Amoxicillin-Metronidazole Plus Famotidine or Lansoprazole for Amoxicillin-Clarithromycin-Proton Pump Inhibitor Treatment Failures for Helicobacter pylori Infection. Murakami, K., Okimoto, T., Kodama, M., Sato, R., Miyajima, H., Ono, M., Inoue, K., Watanabe, K., Otsu, S., Fujioka, T. Helicobacter (2006) [Pubmed]
  18. Why plants grow poorly on very acid soils: are ecologists missing the obvious? Kidd, P.S., Proctor, J. J. Exp. Bot. (2001) [Pubmed]
  19. On the conformational dependence of the proton chemical shifts in nucleosides and nucleotides. II. Proton shifts in the ribose ring of purine nucleosides as a function of the torsion angle about the glycosyl bond. Giessner-Prettre, C., Pullman, B. J. Theor. Biol. (1977) [Pubmed]
  20. O2 activation by binuclear Cu sites: noncoupled versus exchange coupled reaction mechanisms. Chen, P., Solomon, E.I. Proc. Natl. Acad. Sci. U.S.A. (2004) [Pubmed]
  21. Human plasminogen. Proton NMR studies on kringle 1. De Marco, A., Hochschwender, S.M., Laursen, R.A., Llinás, M. J. Biol. Chem. (1982) [Pubmed]
  22. Kinetics and Mechanism of Proton Transport across Membrane Nanopores. Dellago, C., Hummer, G. Phys. Rev. Lett. (2006) [Pubmed]
  23. Oxygen activation by the noncoupled binuclear copper site in peptidylglycine alpha-hydroxylating monooxygenase. Reaction mechanism and role of the noncoupled nature of the active site. Chen, P., Solomon, E.I. J. Am. Chem. Soc. (2004) [Pubmed]
  24. Metal-ligand charge-transfer-promoted photoelectronic Bergman cyclization of copper metalloenediynes: photochemical DNA cleavage via C-4' H-atom abstraction. Benites, P.J., Holmberg, R.C., Rawat, D.S., Kraft, B.J., Klein, L.J., Peters, D.G., Thorp, H.H., Zaleski, J.M. J. Am. Chem. Soc. (2003) [Pubmed]
  25. Dynamics of different functional parts of bacteriorhodopsin: H-2H labeling and neutron scattering. Réat, V., Patzelt, H., Ferrand, M., Pfister, C., Oesterhelt, D., Zaccai, G. Proc. Natl. Acad. Sci. U.S.A. (1998) [Pubmed]
  26. The syn-Oriented 2-OH Provides a Favorable Proton Transfer Geometry in 1,2-Diol Monoester Aminolysis: Implications for the Ribosome Mechanism. Rangelov, M.A., Vayssilov, G.N., Yomtova, V.M., Petkov, D.D. J. Am. Chem. Soc. (2006) [Pubmed]
  27. High choline concentrations in the caudate nucleus in antipsychotic-naive patients with schizophrenia. Bustillo, J.R., Rowland, L.M., Lauriello, J., Petropoulos, H., Hammond, R., Hart, B., Brooks, W.M. The American journal of psychiatry. (2002) [Pubmed]
  28. Sodium/Proton exchanger 3 in the medulla oblongata and set point of breathing control. Wiemann, M., Frede, S., Bingmann, D., Kiwull, P., Kiwull-Schöne, H. Am. J. Respir. Crit. Care Med. (2005) [Pubmed]
  29. Comparison between the photoelectric method and H2 clearance method for measuring cerebrocortical blood flow in cats. Tomita, M., Gotoh, F., Tanahashi, N., Kobari, M., Terayama, Y., Mihara, B., Ohta, K., Gerdsen, I. J. Cereb. Blood Flow Metab. (1988) [Pubmed]
  30. The formation of nitriles in hydrocarbon-rich atmospheres of planets and their satellites: laboratory investigations by the crossed molecular beam technique. Kaiser, R.I., Balucani, N. Acc. Chem. Res. (2001) [Pubmed]
  31. Reduced Prefrontal Glutamate/Glutamine and {gamma}-Aminobutyric Acid Levels in Major Depression Determined Using Proton Magnetic Resonance Spectroscopy. Hasler, G., van der Veen, J.W., Tumonis, T., Meyers, N., Shen, J., Drevets, W.C. Arch. Gen. Psychiatry (2007) [Pubmed]
  32. A study of the reactivity of HO2/O2- with unsaturated fatty acids. Bielski, B.H., Arudi, R.L., Sutherland, M.W. J. Biol. Chem. (1983) [Pubmed]
  33. Mechanism of action of ethanolamine ammonia-lyase, an adenosylcobalamin-dependent enzyme. Proton nuclear magnetic resonance studies of the binding of adenine nucleosides and substrate to ethanolamine ammonia-lyase. Hull, W.E., Mauck, L., Babior, B.M. J. Biol. Chem. (1975) [Pubmed]
  34. The Role of Invariant Amino Acid Residues at the Hydride Transfer Site of Proton-translocating Transhydrogenase. Brondijk, T.H., van Boxel, G.I., Mather, O.C., Quirk, P.G., White, S.A., Jackson, J.B. J. Biol. Chem. (2006) [Pubmed]
  35. Determinants of pH sensing in the two-pore domain K(+) channels TASK-1 and -2. Morton, M.J., O'Connell, A.D., Sivaprasadarao, A., Hunter, M. Pflugers Arch. (2003) [Pubmed]
  36. Hypoxia inducible carbonic anhydrase IX, marker of tumour hypoxia, survival pathway and therapy target. Potter, C., Harris, A.L. Cell Cycle (2004) [Pubmed]
  37. Magnetic resonance spectroscopy: use in monitoring MELAS treatment. Pavlakis, S.G., Kingsley, P.B., Kaplan, G.P., Stacpoole, P.W., O'Shea, M., Lustbader, D. Arch. Neurol. (1998) [Pubmed]
  38. Metabolism of aminoguanidine, diaminoguanidine, and NG-amino-L-arginine by neuronal NO-synthase and covalent alteration of the heme prosthetic group. Lee, A.J., Noon, K.R., Jianmongkol, S., Lau, M., Jenkins, G.J., Osawa, Y. Chem. Res. Toxicol. (2005) [Pubmed]
  39. Extrahepatic biliary obstruction impairs microvascular perfusion and increases leukocyte adhesion in rat liver. Koeppel, T.A., Trauner, M., Baas, J.C., Thies, J.C., Schlosser, S.F., Post, S., Gebhard, M.M., Herfarth, C., Boyer, J.L., Otto, G. Hepatology (1997) [Pubmed]
  40. Atomic wire oxidation of H-terminated Si(100)-( 2x1): domino reaction via oxidation and H migration. Kato, K., Kajiyama, H., Heike, S., Hashizume, T., Uda, T. Phys. Rev. Lett. (2001) [Pubmed]
  41. Early determination of neurological outcome after prehospital cardiopulmonary resuscitation. Berek, K., Lechleitner, P., Luef, G., Felber, S., Saltuari, L., Schinnerl, A., Traweger, C., Dienstl, F., Aichner, F. Stroke (1995) [Pubmed]
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  43. Silicone gel-filled breast implants in women: findings at H-1 MR spectroscopy. Pfleiderer, B., Campbell, T., Hulka, C.A., Kopans, D.B., Lean, C.L., Ackerman, J.L., Brady, T.J., Garrido, L. Radiology. (1996) [Pubmed]
 
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